View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0862_low_9 (Length: 322)

Name: NF0862_low_9
Description: NF0862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0862_low_9
NF0862_low_9
[»] chr4 (1 HSPs)
chr4 (23-322)||(53927131-53927430)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 53927430 - 53927131
Alignment:
Q  23 atcatcaccagactcaagcaagagatacactatctacaatgcaaaacacaatagatatgttaaagactaattgagaaaaacaagatataagaaaatgagg 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  53927430 atcaacaccagactcaagcaagagatacactatctacaatgcaaaacacaacagatatgttaaagactaattgagaaaaacacgatataagaaaatgagg 53927331  T
Q  123 tgcattgaattgtaattatatacctcatggtggccatgagctgcagagtaatgcaaaggagaattacgaactccaaaagtcgaataccttgcaagacgtg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53927330 tgcattgaattgtaattatatacctcatggtggccatgagctgcagagtaatgcaaaggagaattacgaactccaaaagtcgaataccttgcaagacgtg 53927231  T
Q  223 gattatattccaacaaggccttagcctcttgaacatcaccatctcttgctgcagaaactagtctctccccagatgcagaacatccaaaagaattcccaac 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53927230 gattatattccaacaaggccttagcctcttgaacatcaccatctcttgctgcagaaactagtctctccccagatgcagaacatccaaaagaattcccaac 53927131  T

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