View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0863_low_1 (Length: 511)
Name: NF0863_low_1
Description: NF0863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0863_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 95 - 432
Target Start/End: Complemental strand, 4885410 - 4885073
Alignment:
| Q |
95 |
atgttgcatatcttgcattctaccatgtggagcacttgatgtgatccgtatagtacactgcaacggtcgagtagaagaaatcagtggcagcatcaaagca |
194 |
Q |
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| T |
4885410 |
atgttgcatatcttgcattctaccatgtggagcacttgatgtgatccgtatagtacactgcaacggtcgagtagaagaaatcagtggcagcatcaaagca |
4885311 |
T |
|
| Q |
195 |
agtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaagatggcggagttgttcctaagatcgttgttgtccctc |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4885310 |
agtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaagatggcggtgttgttcctaagatcgttgttgtccctc |
4885211 |
T |
|
| Q |
295 |
ccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacaccgccaccaccggataaaaataatcaccgtcatagcaaaaactcgtc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4885210 |
ccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacgccgccaccaccggataaaaataatcaccgtcatagcaaaaactcgtc |
4885111 |
T |
|
| Q |
395 |
ggtaagaaagaaaagaaaagaactaaacgagagaatat |
432 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
4885110 |
ggtaagaaagaaaagaaaagaacaaaacgagagaatat |
4885073 |
T |
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