View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0863_low_2 (Length: 420)
Name: NF0863_low_2
Description: NF0863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0863_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 67 - 341
Target Start/End: Complemental strand, 4885346 - 4885073
Alignment:
| Q |
67 |
ggtcgagtgagatgaaatcagtggcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaa |
166 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4885346 |
ggtcgagt-agaagaaatcagtggcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaa |
4885248 |
T |
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| Q |
167 |
gatggcggagttgttcctaagatcgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacaccgccaccac |
266 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4885247 |
gatggcggtgttgttcctaagatcgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacgccgccaccac |
4885148 |
T |
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| Q |
267 |
cggataaaaataatcaccgtcatagcaaaaactcgtcggtaagaaagaaaagaaaagaactaaacgagagaatat |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4885147 |
cggataaaaataatcaccgtcatagcaaaaactcgtcggtaagaaagaaaagaaaagaacaaaacgagagaatat |
4885073 |
T |
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