View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0863_low_3 (Length: 391)

Name: NF0863_low_3
Description: NF0863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0863_low_3
NF0863_low_3
[»] chr2 (12 HSPs)
chr2 (32-347)||(2349973-2350288)
chr2 (30-347)||(2329671-2329988)
chr2 (152-330)||(2326078-2326256)
chr2 (161-347)||(2292913-2293099)
chr2 (187-347)||(2302558-2302718)
chr2 (161-345)||(2320233-2320417)
chr2 (161-339)||(2309244-2309422)
chr2 (41-107)||(2292805-2292871)
chr2 (29-91)||(2302412-2302474)
chr2 (29-114)||(2325967-2326052)
chr2 (44-120)||(2309139-2309215)
chr2 (41-121)||(2320125-2320205)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 32 - 347
Target Start/End: Original strand, 2349973 - 2350288
Alignment:
Q  32 ttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaacca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2349973 ttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaacca 2350072  T
Q  132 ccacaaccctnnnnnnnggtccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccct 231  Q
    || |||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350073 ccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccct 2350172  T
Q  232 ccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaac 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350173 ccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaac 2350272  T
Q  332 tcagccatcttctctg 347  Q
    ||||||||||||||||    
T  2350273 tcagccatcttctctg 2350288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 2329671 - 2329988
Alignment:
Q  30 acttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaac 129  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | || ||| |  |||||||||| |||||    
T  2329671 acttttacgtaatggaaacatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagccaccctttcatccatttccaccaccaagaaaac 2329770  T
Q  130 caccacaaccctnnnnnnnggtccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaacc 229  Q
    |||| |||||||       |||||||| ||||| || ||||||||||| |||| |||||| ||||||||||   |||| || ||||||||| ||| |||     
T  2329771 caccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaact 2329870  T
Q  230 ctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaa 329  Q
    || ||  ||||| ||||||||||||||| ||| || ||| |||  |||||||||||||||||| |||||| | |||| ||||||||||||||||||||||    
T  2329871 cttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaa 2329970  T
Q  330 actcagccatcttctctg 347  Q
    ||||  || |||||||||    
T  2329971 actcctccgtcttctctg 2329988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 152 - 330
Target Start/End: Original strand, 2326078 - 2326256
Alignment:
Q  152 ccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtccta 251  Q
    ||||| || ||||||||||||||||| || | |||||||||||||||||  |||||||| ||||||||| ||||||| |||||  ||||| |||||||||    
T  2326078 ccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta 2326177  T
Q  252 tcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaa 330  Q
    |||||| ||| || ||| | | | |||||||||||| ||||||||||| | |||| ||||||||||| |||||||||||    
T  2326178 tcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaa 2326256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 347
Target Start/End: Original strand, 2292913 - 2293099
Alignment:
Q  161 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 260  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2292913 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2293012  T
Q  261 tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatcttctctg 347  Q
    || | ||| |||  |||||||||||||||||   |||||||||||| |||||||| | |||||||||||||||| ||||||||||||    
T  2293013 tccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctg 2293099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 187 - 347
Target Start/End: Original strand, 2302558 - 2302718
Alignment:
Q  187 gctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccatt 286  Q
    |||||||||| |||| |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||||| | ||| |||  ||||||||||||    
T  2302558 gctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt 2302657  T
Q  287 ttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatcttctctg 347  Q
    ||||||   |||||| |||| |||||||| | ||||||||||||||||| ||||| |||||    
T  2302658 ttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactcagacatctactctg 2302718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 345
Target Start/End: Original strand, 2320233 - 2320417
Alignment:
Q  161 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 260  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2320233 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2320332  T
Q  261 tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatcttctc 345  Q
    || | ||| |||  ||||||||||||||||||  ||||||| |||| || ||||| | |||||||||||||||||||||||||||    
T  2320333 tccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctc 2320417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 161 - 339
Target Start/End: Original strand, 2309244 - 2309422
Alignment:
Q  161 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 260  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||| |     
T  2309244 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattg 2309343  T
Q  261 tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccat 339  Q
    || | ||| |||  | ||||||||||||||||  ||||||| |||| || ||||| | |||||||||||||||||||||    
T  2309344 tccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccat 2309422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 2292805 - 2292871
Alignment:
Q  41 atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcct 107  Q
    |||||| ||||||||||||  || ||| |||| |||||||||||||| |||||||||||| ||||||    
T  2292805 atggaaccatggttcattgtcctcgttactctttgcatcatcttccttatcagagccatcctctcct 2292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 2302412 - 2302474
Alignment:
Q  29 aacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatc 91  Q
    |||||||||  ||||||||||||||||||||  ||  || |||||||||||||||||||||||    
T  2302412 aacttttacacaatggaaacatggttcattgtcctcattactctctgcatcatcttcctcatc 2302474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 2325967 - 2326052
Alignment:
Q  29 aacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcac 114  Q
    ||||||||||| ||||||||||||||||| |  ||  || |||| ||||||||||||||| ||| ||||||  |||||||| ||||    
T  2325967 aacttttacgtgatggaaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcac 2326052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 2309139 - 2309215
Alignment:
Q  44 gaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccac 120  Q
    |||||||||||||| |  || ||| ||||||||||||||||||| |||||||||||  |||||| | |||| |||||    
T  2309139 gaaacatggttcatagtcctcgttactctctgcatcatcttccttatcagagccatgctctccttcttcacaaccac 2309215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 2320125 - 2320205
Alignment:
Q  41 atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccacc 121  Q
    ||||||||||||||||| |  || ||| | || |||||||||||||| |||||||||||| |||||| | |||| ||||||    
T  2320125 atggaaacatggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcctctccttcttcacaaccacc 2320205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 710 times since January 2019
Visitors: 6130