View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0864_high_1 (Length: 1057)

Name: NF0864_high_1
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0864_high_1
NF0864_high_1
[»] chr1 (28 HSPs)
chr1 (534-1057)||(34591130-34591653)
chr1 (7-420)||(34591698-34592111)
chr1 (648-880)||(11853644-11853895)
chr1 (581-726)||(34589241-34589391)
chr1 (449-503)||(34591647-34591701)
chr1 (388-501)||(48548975-48549086)
chr1 (418-501)||(1514354-1514437)
chr1 (398-477)||(7524148-7524227)
chr1 (418-501)||(10324929-10325012)
chr1 (390-501)||(20026127-20026238)
chr1 (401-533)||(6041457-6041583)
chr1 (418-501)||(11049261-11049344)
chr1 (432-570)||(32088580-32088715)
chr1 (388-443)||(35961437-35961492)
chr1 (429-470)||(7790644-7790685)
chr1 (429-518)||(8381961-8382049)
chr1 (387-467)||(1233350-1233430)
chr1 (410-454)||(39673965-39674009)
chr1 (388-443)||(5268288-5268343)
chr1 (388-443)||(34915135-34915190)
chr1 (384-451)||(44786875-44786942)
chr1 (418-469)||(52263638-52263689)
chr1 (392-446)||(213246-213300)
chr1 (400-470)||(38797603-38797672)
chr1 (426-568)||(47321906-47322046)
chr1 (421-470)||(213531-213580)
chr1 (406-451)||(37733613-37733658)
chr1 (435-480)||(43959627-43959672)
[»] chr6 (17 HSPs)
chr6 (388-535)||(34620864-34621010)
chr6 (388-535)||(34748301-34748447)
chr6 (388-535)||(1485107-1485253)
chr6 (418-535)||(2234493-2234610)
chr6 (388-472)||(882726-882810)
chr6 (388-451)||(32888918-32888981)
chr6 (391-501)||(31305811-31305921)
chr6 (388-501)||(30926740-30926852)
chr6 (421-501)||(852543-852623)
chr6 (389-501)||(1499911-1500023)
chr6 (391-451)||(2493975-2494035)
chr6 (400-470)||(4910950-4911020)
chr6 (388-501)||(9505781-9505894)
chr6 (422-494)||(25388095-25388166)
chr6 (426-489)||(34027416-34027479)
chr6 (418-492)||(17225872-17225946)
chr6 (418-467)||(24982338-24982387)
[»] chr7 (14 HSPs)
chr7 (388-568)||(45004965-45005144)
chr7 (388-470)||(40561719-40561801)
chr7 (420-501)||(38123659-38123740)
chr7 (388-500)||(45557377-45557489)
chr7 (457-568)||(15050237-15050348)
chr7 (392-499)||(41788329-41788436)
chr7 (388-501)||(27571873-27571986)
chr7 (410-481)||(44638428-44638499)
chr7 (398-468)||(32295228-32295298)
chr7 (388-470)||(40491620-40491702)
chr7 (388-438)||(26975317-26975367)
chr7 (384-470)||(40795946-40796032)
chr7 (378-470)||(23783151-23783244)
chr7 (388-465)||(44570701-44570778)
[»] chr8 (17 HSPs)
chr8 (388-535)||(16972025-16972171)
chr8 (388-501)||(32927903-32928016)
chr8 (384-501)||(26100103-26100220)
chr8 (396-451)||(14382457-14382512)
chr8 (388-470)||(4950525-4950607)
chr8 (408-446)||(10553153-10553191)
chr8 (388-448)||(8700900-8700960)
chr8 (384-444)||(28805243-28805303)
chr8 (391-499)||(32056378-32056484)
chr8 (417-473)||(32736501-32736557)
chr8 (400-467)||(2924822-2924889)
chr8 (411-470)||(5859047-5859106)
chr8 (426-501)||(13384653-13384728)
chr8 (418-481)||(32101104-32101167)
chr8 (399-505)||(35494997-35495103)
chr8 (388-449)||(11502166-11502227)
chr8 (394-451)||(37641611-37641668)
[»] chr2 (19 HSPs)
chr2 (388-501)||(44439265-44439378)
chr2 (390-473)||(33502276-33502356)
chr2 (388-451)||(15220822-15220885)
chr2 (400-535)||(22535976-22536110)
chr2 (418-501)||(42982555-42982638)
chr2 (388-481)||(4383002-4383095)
chr2 (388-464)||(1976825-1976901)
chr2 (390-501)||(4894120-4894231)
chr2 (417-452)||(38074469-38074504)
chr2 (399-470)||(42741019-42741089)
chr2 (418-451)||(9605247-9605280)
chr2 (398-470)||(37420164-37420238)
chr2 (385-448)||(37519904-37519967)
chr2 (429-467)||(32307129-32307167)
chr2 (429-467)||(32798510-32798548)
chr2 (384-450)||(40401600-40401666)
chr2 (388-533)||(3476390-3476535)
chr2 (400-449)||(11504035-11504084)
chr2 (400-501)||(33019129-33019230)
[»] chr4 (18 HSPs)
chr4 (418-501)||(10185205-10185288)
chr4 (418-535)||(32818361-32818477)
chr4 (426-501)||(33843988-33844063)
chr4 (420-493)||(4243406-4243479)
chr4 (390-451)||(25319109-25319170)
chr4 (391-451)||(27096562-27096622)
chr4 (424-468)||(32100336-32100380)
chr4 (411-483)||(39386662-39386734)
chr4 (382-449)||(17898083-17898150)
chr4 (388-467)||(22683909-22683988)
chr4 (392-506)||(37439151-37439263)
chr4 (389-501)||(22250237-22250349)
chr4 (384-451)||(28178802-28178869)
chr4 (388-451)||(33843772-33843835)
chr4 (399-470)||(41751244-41751315)
chr4 (422-477)||(47596296-47596351)
chr4 (952-1034)||(16866417-16866499)
chr4 (421-481)||(31012732-31012793)
[»] scaffold0361 (1 HSPs)
scaffold0361 (388-470)||(14075-14157)
[»] chr3 (18 HSPs)
chr3 (384-501)||(27499319-27499435)
chr3 (390-470)||(46853497-46853577)
chr3 (388-501)||(3776533-3776646)
chr3 (420-473)||(4526171-4526224)
chr3 (388-501)||(35264372-35264485)
chr3 (388-533)||(37334995-37335139)
chr3 (414-501)||(30300985-30301073)
chr3 (417-473)||(37703138-37703194)
chr3 (410-467)||(53906670-53906727)
chr3 (398-470)||(27266765-27266837)
chr3 (943-1010)||(9579478-9579545)
chr3 (429-535)||(35058339-35058445)
chr3 (388-535)||(51285547-51285694)
chr3 (388-470)||(35253428-35253510)
chr3 (421-535)||(36302161-36302274)
chr3 (388-470)||(41596110-41596192)
chr3 (952-1013)||(1374140-1374201)
chr3 (400-533)||(25359547-25359679)
[»] chr5 (11 HSPs)
chr5 (388-448)||(117457-117517)
chr5 (426-470)||(10898763-10898807)
chr5 (422-473)||(8506701-8506752)
chr5 (391-470)||(34443017-34443096)
chr5 (411-481)||(42858139-42858209)
chr5 (384-473)||(35108278-35108367)
chr5 (426-535)||(36639915-36640023)
chr5 (410-467)||(37886021-37886078)
chr5 (418-501)||(2937910-2937993)
chr5 (426-477)||(18851081-18851132)
chr5 (401-470)||(15368515-15368584)
[»] scaffold0168 (1 HSPs)
scaffold0168 (418-533)||(31806-31923)
[»] scaffold0314 (1 HSPs)
scaffold0314 (400-473)||(17172-17245)


Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 534 - 1057
Target Start/End: Complemental strand, 34591653 - 34591130
Alignment:
Q  534 cttcatgagagcaacacaacaagtcaaaatcaattttgtgtgagggtagtatgaaggtagaagagagattttggcgaaaatgttgaactgaatattattg 633  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591653 cttcatgagagcaacaaaacaagtcaaaatcaattttgtgtgagggtagtatgaaggtagaagagagattttggcgaaaatgttgaactgaatattattg 34591554  T
Q  634 atcaacatctaaaaaggcttattgtacacgtgaaactaacatctaactaacttgcttgtgatgcaagctatataacaaactaaccaataaacagaatgat 733  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591553 atcaacatctaaaaaggcttattgtacacatgaaactaacatctaactaacttgcttgtgatgcaagctatataacaaactaaccaataaacagaatgat 34591454  T
Q  734 acaactaacaattaactaacaatagatatgatgtatcacttcctacatattctcccctaaactgaccttataactagtcagtttgcacattccaagcttg 833  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591453 acaactaacaattaactaacaatagatatgatgtatcacttcctacatattctcccctaaactgaccttataactagtcagtttgcacattccaagcttg 34591354  T
Q  834 tctctcaatttgcagaatgttactaaactcaaaaggcttggtcataatgtcagccagtttatcttgtgatgaacaatgcagaagttgaatgactctgtct 933  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34591353 tctctcaatttgcagaatgttactaaactcaaaaggcttggtcataatgtcagccagtttatcttgtgatgaacaatgcagaagttgaatgactctatct 34591254  T
Q  934 ttggtcaagtcacgaagaaagtggaacctgacatcaatgtgtttactccttccatgcatgactggatttttcgacaactttgttgatgaactattgtcac 1033  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591253 ttggtcaagtcacgaagaaagtggaacctgacatcaatgtgtttactccttccatgcatgactggatttttcgacaactttgttgatgaactattgtcac 34591154  T
Q  1034 agtgaatggtgatgcagtcccctt 1057  Q
    ||||||||||||||||||||||||    
T  34591153 agtgaatggtgatgcagtcccctt 34591130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Complemental strand, 34592111 - 34591698
Alignment:
Q  7 ctagccactatggcgattcttgcgatcagtgagatgaatgagttgcttcattttctctacattcatactagaaagttgcactcatatatgaatgtacact 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34592111 ctagccactatggcgattcttgcgatcagtgagatgaatgagttgcttcattttctctacattcatactagaaagttgcactcatatatgaatgtacact 34592012  T
Q  107 acagttaagattaatatatgtatagtaacgagaaaaaagtaagagtggtggtaactagtaagatagtaaaaatgtcacaagttaaaacagtgttttttcc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34592011 acagttaagattaatatatgtatagtaacgagaaaaaagtaagtgtggtggtaactagtaagatagtaaaaaggtcacaagttaaaacagtgttttttcc 34591912  T
Q  207 ttgacagagtgatgacattacaagttaaaatgtagttctgcacgaggattaattaattttaaaagtgttgaatttattatgatattgacatgtttatgcg 306  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34591911 ttgacagagtgatgacattaaaagttaaaatgtagttctgcacgaggattaattaattttaaaagtgttgaatttattatgatattgacatgcttatgcg 34591812  T
Q  307 tacgtgcatgtctgtttgtttcagcaatgataaaaactgattttgcgaaattgatttgtaaaatttatatatggttgaaaatgagttgaaagtaaagtga 406  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591811 tacgtgcatgtctgtttggttcagcgatgataaaaactgattttgcgaaattgatttgtaaaatttatatatggttgaaaatgagttgaaagtaaagtga 34591712  T
Q  407 ttcatgtttcaata 420  Q
    ||||||||||||||    
T  34591711 ttcatgtttcaata 34591698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 648 - 880
Target Start/End: Complemental strand, 11853895 - 11853644
Alignment:
Q  648 aggcttattgtacacgtgaaactaacatctaactaacttgcttgtgatgcaagctatataaca------aactaaccaataaacagaatgatacaactaa 741  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || || ||      ||||||| || |||||||||||| |||||||    
T  11853895 aggcttattgtacaagagaaactaccatctaactaacttgcttgtgatgcaagccatctaccattaccaaactaactaacaaacagaatgattcaactaa 11853796  T
Q  742 caattaactaacaatagatatgatgtatcacttccta-catattctcccctaaactgaccttataactagtc--------------agtttgcacattcc 826  Q
    ||||||||||||||  || |   |  || |||||||| ||||| |||||||||||||| |||||||| ||||              |||||||||| |||    
T  11853795 caattaactaacaacggacaaagttaat-acttcctaacatatcctcccctaaactgaacttataacaagtctatttagcaattccagtttgcacagtcc 11853697  T
Q  827 aagcttgtctctcaatttgcagaatgttactaaactcaaaaggcttggtcataa 880  Q
    |||||||||||||||| || |||||||| |||||||| ||||||||||||||||    
T  11853696 aagcttgtctctcaatctggagaatgtttctaaactc-aaaggcttggtcataa 11853644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 581 - 726
Target Start/End: Complemental strand, 34589391 - 34589241
Alignment:
Q  581 agtatgaaggtagaagagagattttggcgaaaatgttgaactgaatattattgatcaacatct-----aaaaaggcttattgtacacgtgaaactaacat 675  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||||||||| || |||||  | |     | | || || |||||||| ||||||||| |||    
T  34589391 agtatgaaggtagaagaaagattttggtgaaaatgttcaactgaatattttttatcaagttatggcttatatagactaattgtacaagtgaaactaccat 34589292  T
Q  676 ctaactaacttgcttgtgatgcaagctatataacaaactaaccaataaaca 726  Q
    | |||||| ||||||||| |||||||||| ||||||||||||||| |||||    
T  34589291 caaactaatttgcttgtgttgcaagctatctaacaaactaaccaacaaaca 34589241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 449 - 503
Target Start/End: Complemental strand, 34591701 - 34591647
Alignment:
Q  449 aatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34591701 aatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatg 34591647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 388 - 501
Target Start/End: Original strand, 48548975 - 48549086
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| ||||| ||||| ||||||  ||||||||||||||||||||||||||||||||  ||| || |||||||||||| || ||| | | ||| |    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaacaataa--atgagtttaaaaatcaattctagaatcagaagctac 48549072  T
Q  488 aatttctagcttca 501  Q
    ||||||||||||||    
T  48549073 aatttctagcttca 48549086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 418 - 501
Target Start/End: Complemental strand, 1514437 - 1514354
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    ||||||| |||||||| ||||||||||||||||| || ||||||||||||||| |||||| ||| ||| ||| | |||||||||    
T  1514437 atacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttca 1514354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 398 - 477
Target Start/End: Complemental strand, 7524227 - 7524148
Alignment:
Q  398 gtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataat 477  Q
    |||||||||||  |||||  | ||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||    
T  7524227 gtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataat 7524148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 418 - 501
Target Start/End: Original strand, 10324929 - 10325012
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    ||||||| ||||||||||||||  |||||||||| || ||||||||||||||| || ||| ||| ||| ||||||||| |||||    
T  10324929 atacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttctatcttca 10325012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 390 - 501
Target Start/End: Original strand, 20026127 - 20026238
Alignment:
Q  390 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaa 489  Q
    ||||||| |||| |||||| |||||  | ||||||||  ||||||||| ||||||||||||| || ||||  ||||||||| || | ||||| |||| ||    
T  20026127 agttgaaggtaaggtgattaatgttcaagtacatttacataaaagtgaattgaacaataaatttgagtgttcaaatcaattctagagttaaaagcttgaa 20026226  T
Q  490 tttctagcttca 501  Q
    ||||||||||||    
T  20026227 tttctagcttca 20026238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 401 - 533
Target Start/End: Complemental strand, 6041583 - 6041457
Alignment:
Q  401 aagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttc 500  Q
    |||||||| ||||||  ||||||  ||||||||||||||| |||||||||| || || |||||| ||||| || ||| ||| ||||||| ||||||||||    
T  6041583 aagtgatttatgtttggatacat--atgtaaaagtgagttaaacaataaat-tgagtctaaaaaacaattctagaatcaaaggcttcaaattctagcttc 6041487  T
Q  501 atgtattaatcaattctgtacgcaaaatcaatt 533  Q
    |   || ||| |||| |||| ||||||||||||    
T  6041486 a---atcaatgaattttgtaggcaaaatcaatt 6041457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 418 - 501
Target Start/End: Complemental strand, 11049344 - 11049261
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    ||||||| | |||||||||| |||||| |||||| || |||||||||||||||||| ||| ||| ||| ||| | |||||||||    
T  11049344 atacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttca 11049261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 432 - 570
Target Start/End: Original strand, 32088580 - 32088715
Alignment:
Q  432 aagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaaaatcaa 531  Q
    |||||||||||||||||||| |  |||||||||||| |||||  || ||| |||  || | ||||||||| ||   |||||||| |||| | ||||||||    
T  32088580 aagtgagttgaacaataaatttcagtgtaaaaatcactttta--atcaaaagctcgaaatcctagcttcaagttagaatcaattttgtagg-aaaatcaa 32088676  T
Q  532 ttcttcatgagagcaacacaacaagtcaaaatcaatttt 570  Q
    |||| | ||||||||||  |||| |||||||||||||||    
T  32088677 ttctacttgagagcaaccaaacatgtcaaaatcaatttt 32088715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 35961492 - 35961437
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 443  Q
    ||||||||| ||||| ||||| ||||||| ||||||| ||||||||||||||||||    
T  35961492 tgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 7790644 - 7790685
Alignment:
Q  429 taaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaatt 7790685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 429 - 518
Target Start/End: Complemental strand, 8382049 - 8381961
Alignment:
Q  429 taaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctg 518  Q
    ||||||||||||||||||||||  ||  |||||||||||||| || || || | ||| ||||||||||||||| |||  |||||||||||    
T  8382049 taaaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaactagaggctacaatttctagcttcaagta-gaatcaattctg 8381961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 387 - 467
Target Start/End: Complemental strand, 1233430 - 1233350
Alignment:
Q  387 atgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 467  Q
    ||||||| || ||||| | ||| ||||||  ||||||| |||| |||||||||| |||||||||| || ||||||||||||    
T  1233430 atgagtttaaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaatttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 39674009 - 39673965
Alignment:
Q  410 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatg 454  Q
    |||||| |||| | |||||||||||||||||||||||||||||||    
T  39674009 atgtttgaatatacttatgtaaaagtgagttgaacaataaatatg 39673965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 5268343 - 5268288
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 443  Q
    ||||||||| |||||||||||  ||||| |||| ||| ||||||||||||||||||    
T  5268343 tgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagttgaa 5268288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 34915190 - 34915135
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaa 443  Q
    ||||||| | ||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  34915190 tgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 44786875 - 44786942
Alignment:
Q  384 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    ||||||||||||| ||||| ||||| |||||  |||||||| |||||||||||| || ||||| ||||    
T  44786875 aaaatgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtgaattcaacaacaaat 44786942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 52263638 - 52263689
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaat 469  Q
    ||||||| |||||||| |||||| |||||||||| || ||||||||||||||    
T  52263638 atacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 52263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 213246 - 213300
Alignment:
Q  392 ttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaa 446  Q
    ||||| ||||||||||| ||||||  ||||||  |||||||||||||||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaacaa 213300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 400 - 470
Target Start/End: Original strand, 38797603 - 38797672
Alignment:
Q  400 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||| ||||||  ||||||| || |||||||||||||||| |||||| || |||| ||||||||||    
T  38797603 aaagtgatttatgtttgcatacatt-atttaaaagtgagttgaactataaatttgtgtgtgaaaatcaatt 38797672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 426 - 568
Target Start/End: Original strand, 47321906 - 47322046
Alignment:
Q  426 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaa 525  Q
    |||||||||||| |||||| |||||| || || | |||||||||| || |||||||  || ||| ||||||||||| ||| ||||||||| |  | |||     
T  47321906 atgtaaaagtgaattgaactataaatttgtgtatgaaaatcaattctagaattaaa-actgcaaattctagcttcaagta-taatcaattatagaagcag 47322003  T
Q  526 aatcaattcttcatgagagcaacacaacaagtcaaaatcaatt 568  Q
    |||||||||| |  || | ||||| |||| |||||||||||||    
T  47322004 aatcaattctactcgacaacaacaaaacatgtcaaaatcaatt 47322046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 421 - 470
Target Start/End: Original strand, 213531 - 213580
Alignment:
Q  421 catttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    |||| ||||||||||||||||||||| |||| || || ||||||||||||    
T  213531 cattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaatt 213580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 406 - 451
Target Start/End: Original strand, 37733613 - 37733658
Alignment:
Q  406 attcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    |||||||||| |||||||||||||| || ||||||||| |||||||    
T  37733613 attcatgtttgaatacatttatgtataaatgagttgaataataaat 37733658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 43959672 - 43959627
Alignment:
Q  435 tgagttgaacaataaatatgggtgtaaaaatcaattttataattaa 480  Q
    |||||| |||||||||| || || ||||||||||||||||||||||    
T  43959672 tgagttaaacaataaatttgagtctaaaaatcaattttataattaa 43959627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 388 - 535
Target Start/End: Complemental strand, 34621010 - 34620864
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||| ||||||| |  ||||||||||||||| || ||| | | |||      
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34620911  T
Q  488 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 535  Q
     |||||||||||||||||  ||||||||| | | ||||||| ||||||    
T  34620910 gatttctagcttcatgta-gaatcaattccggaggcaaaattaattct 34620864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 388 - 535
Target Start/End: Complemental strand, 34748447 - 34748301
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| ||||||||||| ||||||  |||||||||||||||||||||||||| ||||||| |  ||||||||||||||| || ||| | | |||      
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34748348  T
Q  488 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 535  Q
     |||||||||||||||||  ||||||||| | | ||||||| ||||||    
T  34748347 gatttctagcttcatgta-gaatcaattccggaggcaaaattaattct 34748301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 388 - 535
Target Start/End: Original strand, 1485107 - 1485253
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    |||||| |||||  ||||||| | ||||  ||||| |||||||||||||||||||||||||||| || |||| |||||||||| || ||| ||| ||| |    
T  1485107 tgagtttaaagttgagtgatttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctcc 1485206  T
Q  488 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 535  Q
    ||||||||| |||| |||  ||||||||||  | ||||||| ||||||    
T  1485207 aatttctagattcaagta-gaatcaattctaaaggcaaaattaattct 1485253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 418 - 535
Target Start/End: Complemental strand, 2234610 - 2234493
Alignment:
Q  418 atacatttatgtaaaagtgagttgaac-aataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattc 516  Q
    |||||||||||||| |||||||||||| ||||||| || |||| |||||||||| || ||| ||| |||||| ||| |||||||| || | ||||||||     
T  2234610 atacatttatgtaatagtgagttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagt-tgaatcaattt 2234512  T
Q  517 tgtacgcaaaatcaattct 535  Q
    || | ||||||||||||||    
T  2234511 tgaaggcaaaatcaattct 2234493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 882810 - 882726
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttt 472  Q
    ||||||||| ||||| ||||| ||||||  ||||||| ||| ||||||||||| |||||||||| ||  ||||||||||||||||    
T  882810 tgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatttt 882726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 32888918 - 32888981
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    |||||||||  |||| ||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  32888918 tgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaacaataaat 32888981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 391 - 501
Target Start/End: Original strand, 31305811 - 31305921
Alignment:
Q  391 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaat 490  Q
    |||||| ||||| | ||| ||||||  ||| ||| ||||||||||||||||| |||||||| || ||||| ||||||||| || ||| ||| ||| ||||    
T  31305811 gttgaaggtaaaatcatttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaagctccaat 31305910  T
Q  491 ttctagcttca 501  Q
    || ||||||||    
T  31305911 ttttagcttca 31305921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 388 - 501
Target Start/End: Original strand, 30926740 - 30926852
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||| ||| ||||| ||||| |||||| |||| ||| ||| |||||| | ||||||||||||| || ||||||||||||||| || ||| |||  || |    
T  30926740 tgagtagaaggtaaaatgatttatgtttgaatatattcatgcaaaagtaa-ttgaacaataaatttgagtgtaaaaatcaattctagaataaaaaactcc 30926838  T
Q  488 aatttctagcttca 501  Q
    ||||||||||||||    
T  30926839 aatttctagcttca 30926852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 421 - 501
Target Start/End: Complemental strand, 852623 - 852543
Alignment:
Q  421 catttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    |||| ||||||||||||||| ||||||| || |||||||||||||||||| || ||| | |  || |||||||||||||||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaatcagaacctacaatttctagcttca 852543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 389 - 501
Target Start/End: Complemental strand, 1500023 - 1499911
Alignment:
Q  389 gagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttca 488  Q
    |||||||  ||||| ||||| |||||| |||||||||||||||||||||||  | ||| |||| || || | ||||| ||||||||| | |||  |||||    
T  1500023 gagttgagtgtaaattgatttatgtttgaatacatttatgtaaaagtgagtctagcaacaaatttgagttttaaaattaattttatactaaaaaacttca 1499924  T
Q  489 atttctagcttca 501  Q
    |||| ||||||||    
T  1499923 atttttagcttca 1499911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 2493975 - 2494035
Alignment:
Q  391 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    |||||| |||| |||||| |||||| |||| ||||||||||||||| ||||||||||||||    
T  2493975 gttgaatgtaaggtgatttatgtttgaatatatttatgtaaaagtgtgttgaacaataaat 2494035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 400 - 470
Target Start/End: Complemental strand, 4911020 - 4910950
Alignment:
Q  400 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||| ||||||  |||||||||||||||||||||| |||| |||||| ||  ||| ||||||||||    
T  4911020 aaagtgatttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaatt 4910950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 388 - 501
Target Start/End: Complemental strand, 9505894 - 9505781
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| | ||||||||  |||||   ||| ||| ||||||||||| |||||||||||||| || || |||||||||||  || ||| ||| ||| |    
T  9505894 tgagttgaaggcaaagtgatatatgttattatatattcatgtaaaagtgtgttgaacaataaatttgagtttaaaaatcaatcatagaatcaaaagctcc 9505795  T
Q  488 aatttctagcttca 501  Q
    |||||||| |||||    
T  9505794 aatttctatcttca 9505781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 422 - 494
Target Start/End: Complemental strand, 25388166 - 25388095
Alignment:
Q  422 atttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttct 494  Q
    |||||||||||||||||||| ||||||||| || |||| |||||||||| || ||| |||  |||||||||||    
T  25388166 atttatgtaaaagtgagttg-acaataaatttgagtgtcaaaatcaattctaaaatcaaagacttcaatttct 25388095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 489
Target Start/End: Original strand, 34027416 - 34027479
Alignment:
Q  426 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaa 489  Q
    |||||| ||||||||||| ||||||| || ||||||||||||||| || ||| ||| |||||||    
T  34027416 atgtaagagtgagttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagcttcaa 34027479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 418 - 492
Target Start/End: Complemental strand, 17225946 - 17225872
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaattt 492  Q
    ||||||| |||||||| |||||||||| |||||| ||  |||||||||||||| || ||| ||| ||| ||||||    
T  17225946 atacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaattt 17225872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 24982387 - 24982338
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 467  Q
    ||||||| |||||||||| |||||||||| |||| || ||||||||||||    
T  24982387 atacattcatgtaaaagtaagttgaacaaaaaatttgagtgtaaaaatca 24982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 7e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 388 - 568
Target Start/End: Complemental strand, 45005144 - 45004965
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| |||||  |||| ||||||  ||| |||||||||||||||||||||| ||||||| || |||  || ||||||| |||||| |||  || |    
T  45005144 tgagttgaaggtaaaccgattgatgttttgatatatttatgtaaaagtgagttgaataataaatttgagtgctaagatcaattctataatcaaagcctcc 45005045  T
Q  488 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattcttcatgagagcaacacaacaagtcaaaatcaatt 568  Q
    ||||| |||||||| |||  ||||||||||| | ||||||||||||||    |||||||||  |||| |||||||||||||    
T  45005044 aatttttagcttcaagta-gaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaacatgtcaaaatcaatt 45004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 388 - 470
Target Start/End: Original strand, 40561719 - 40561801
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||| || || ||||| |||| ||||    
T  40561719 tgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagtgtataaattaatt 40561801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 420 - 501
Target Start/End: Original strand, 38123659 - 38123740
Alignment:
Q  420 acatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    ||||| ||||||||||||||||| |||||||| || ||||||||||||||| || ||||| | ||| |||||||||||||||    
T  38123659 acattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttca 38123740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 388 - 500
Target Start/End: Complemental strand, 45557489 - 45557377
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| |||||||||||  |||||  ||||||| ||||||||||||||||| | | |||| || ||||||||||||||  || ||||||| ||| |    
T  45557489 tgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatcctagaattaaaagctac 45557390  T
Q  488 aatttctagcttc 500  Q
    |  ||||||||||    
T  45557389 agattctagcttc 45557377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 457 - 568
Target Start/End: Complemental strand, 15050348 - 15050237
Alignment:
Q  457 tgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaaaatcaattcttcatgagagcaacacaacaag 556  Q
    ||||||||||||||||| |||  || |||  |||||||||||||| |  | ||||||||||  | |||||||||||||| |||||||| |||  |||| |    
T  15050348 tgtaaaaatcaattttagaatggaaagctctaatttctagcttcaagattaaatcaattctacaagcaaaatcaattctacatgagagtaaccaaacagg 15050249  T
Q  557 tcaaaatcaatt 568  Q
    ||||||||||||    
T  15050248 tcaaaatcaatt 15050237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 392 - 499
Target Start/End: Complemental strand, 41788436 - 41788329
Alignment:
Q  392 ttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatt 491  Q
    ||||| ||||||||||| ||||||  ||||||| || |||||||||||||||||  |||| || |||| |||||||||| || | | ||| | |||||||    
T  41788436 ttgaaggtaaagtgatttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattatagactcaaaagtttcaatt 41788337  T
Q  492 tctagctt 499  Q
    ||||||||    
T  41788336 tctagctt 41788329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 388 - 501
Target Start/End: Complemental strand, 27571986 - 27571873
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    |||||| || ||||| ||||| ||| ||  ||||||||||||||| |||||||||| ||||||  || |||| |||||||||| || ||| ||| ||| |    
T  27571986 tgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagctcc 27571887  T
Q  488 aatttctagcttca 501  Q
    |||||||| |||||    
T  27571886 aatttctaacttca 27571873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 44638428 - 44638499
Alignment:
Q  410 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaa 481  Q
    |||||| ||||||||||||||||   ||||||||  |||||| || ||||||||||||||||| ||||||||    
T  44638428 atgtttaaatacatttatgtaaatacgagttgaattataaatttgtgtgtaaaaatcaattttttaattaaa 44638499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 398 - 468
Target Start/End: Complemental strand, 32295298 - 32295228
Alignment:
Q  398 gtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaa 468  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||  |||||| || |||| | ||||||    
T  32295298 gtaaagtgatttgtgttttaatacatttatgtaaaagtgagttgaattataaatttgtgtgttagaatcaa 32295228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 388 - 470
Target Start/End: Complemental strand, 40491702 - 40491620
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||| ||||||||||| || |||  ||||||| ||||||||||||||| |||  ||||| || |||||||| ||||||    
T  40491702 tgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaatt 40491620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 26975317 - 26975367
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgag 438  Q
    ||||||||| ||||| ||||| |||||| ||||| ||||||||||||||||    
T  26975317 tgagttgaatgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 26975367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 40795946 - 40796032
Alignment:
Q  384 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||| ||||| |||||||| || ||| ||  ||||||| |||||||||||| ||||| | ||||| || |||| ||||||||||    
T  40795946 aaaatgaattgaaggtaaagtggtttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaatt 40796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 378 - 470
Target Start/End: Complemental strand, 23783244 - 23783151
Alignment:
Q  378 tggttgaaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgt-aaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||| |||||| || |||||| |||| |||||| ||||  ||||||| ||||||  |||||||||||||| || | ||||| |||||||    
T  23783244 tggttgaaactgagttaaatgtaaagcgatttatgtttgaataagtttatgtaaaaagtaggttgaacaataaatttgagggtaaagatcaatt 23783151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 388 - 465
Target Start/End: Original strand, 44570701 - 44570778
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaat 465  Q
    ||||||||| ||||||||||| |||||| | || ||| || ||||||||||||||  ||||||| ||  |||||||||    
T  44570701 tgagttgaatgtaaagtgatttatgtttgattatattcatataaaagtgagttgataaataaatttgaatgtaaaaat 44570778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 388 - 535
Target Start/End: Original strand, 16972025 - 16972171
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| ||||| |||||  ||||| |||||||| |||||||||||| ||||||||||||| || || |||||||||||| || |||||||  || |    
T  16972025 tgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactac 16972124  T
Q  488 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 535  Q
    || |||||||||||  ||  |||||| |||| | ||||||||||||||    
T  16972125 aaattctagcttcaaata-caatcaactctgaaggcaaaatcaattct 16972171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 388 - 501
Target Start/End: Complemental strand, 32928016 - 32927903
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| | |||||||||  |||||  ||||||| ||||||||||||||||||| |||||| || |||||||||| |||| |||||| ||| ||| |    
T  32928016 tgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctac 32927917  T
Q  488 aatttctagcttca 501  Q
    || | |||||||||    
T  32927916 aaatcctagcttca 32927903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 384 - 501
Target Start/End: Original strand, 26100103 - 26100220
Alignment:
Q  384 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatg 483  Q
    |||| |||||||| ||||||  |||  |||||  || |||||||||||||||||||||||| |||||| || ||||||||||||||| || ||| ||| |    
T  26100103 aaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaag 26100202  T
Q  484 cttcaatttctagcttca 501  Q
    || ||| | |||||||||    
T  26100203 ctacaaatcctagcttca 26100220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 396 - 451
Target Start/End: Complemental strand, 14382512 - 14382457
Alignment:
Q  396 aagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    ||||||| |||| |||||||| |||| |||||||||||||||||||||||||||||    
T  14382512 aagtaaactgatacatgtttcgatacttttatgtaaaagtgagttgaacaataaat 14382457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 388 - 470
Target Start/End: Complemental strand, 4950607 - 4950525
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||| ||||||||||| ||||||  ||| |||||||  ||||||||||||| ||||||| |  |||||||||| ||||    
T  4950607 tgagttgaaggtaaagtgatttatgtttggatatatttatgagaaagtgagttgaaaaataaatttaagtgtaaaaattaatt 4950525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 408 - 446
Target Start/End: Original strand, 10553153 - 10553191
Alignment:
Q  408 tcatgtttcaatacatttatgtaaaagtgagttgaacaa 446  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  10553153 tcatgtttaaatacatttatgtaaaagtgagttgaacaa 10553191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 8700960 - 8700900
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 448  Q
    ||||||||| ||||||| ||| |||||| |||| |||  ||||||||||||||||||||||    
T  8700960 tgagttgaaggtaaagtaatttatgtttaaataaattcttgtaaaagtgagttgaacaata 8700900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 28805303 - 28805243
Alignment:
Q  384 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaac 444  Q
    ||||||| ||||||||||| ||||| |||||| |||||||| || ||||||| ||||||||    
T  28805303 aaaatgatttgaaagtaaaatgatttatgtttgaatacattaatataaaagtaagttgaac 28805243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 391 - 499
Target Start/End: Complemental strand, 32056484 - 32056378
Alignment:
Q  391 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaat 490  Q
    |||||||||||||||||  ||| ||  |  |||| |||||||||||||||||||| || || |||||||||||||||||| || || || | ||| ||||    
T  32056484 gttgaaagtaaagtgatctatggttggacgcattcatgtaaaagtgagttgaacagtatat-tgggtgtaaaaatcaattctagaa-tagaagctccaat 32056387  T
Q  491 ttctagctt 499  Q
    |||||||||    
T  32056386 ttctagctt 32056378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 417 - 473
Target Start/End: Complemental strand, 32736557 - 32736501
Alignment:
Q  417 aatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 473  Q
    |||||||| |||||||||||| |||||| |||||| || |||||||||| |||||||    
T  32736557 aatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaatttta 32736501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 467
Target Start/End: Complemental strand, 2924889 - 2924822
Alignment:
Q  400 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 467  Q
    ||||||| | ||||||  |||||| |||||||||||||||||| ||||| || || ||||||||||||    
T  2924889 aaagtgagttatgtttggatacatatatgtaaaagtgagttgatcaatatatttgagtgtaaaaatca 2924822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 5859047 - 5859106
Alignment:
Q  411 tgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||| ||| |||| ||||||||||||||||||| |||||  || |||||||||||||||    
T  5859047 tgtttgaatgcattcatgtaaaagtgagttgaaccataaaattgtgtgtaaaaatcaatt 5859106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 501
Target Start/End: Original strand, 13384653 - 13384728
Alignment:
Q  426 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    ||||||||||||||||||| |||||| || |||| |||||||||| || ||| ||| ||| ||| || ||||||||    
T  13384653 atgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttca 13384728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 32101167 - 32101104
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaa 481  Q
    ||||||||||||||||||||||||||| |||||| ||  | | ||||| ||||||| |||||||    
T  32101167 atacatttatgtaaaagtgagttgaactataaatttgtatatgaaaattaattttaaaattaaa 32101104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 399 - 505
Target Start/End: Complemental strand, 35495103 - 35494997
Alignment:
Q  399 taaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagct 498  Q
    ||||||||||  |||||  ||| ||| |||||||||| |||||||| ||| || || ||||||||| ||||| || ||| ||| ||| ||| | ||||||    
T  35495103 taaagtgatttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagct 35495004  T
Q  499 tcatgta 505  Q
    |||||||    
T  35495003 tcatgta 35494997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 11502166 - 11502227
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 449  Q
    |||||| |||||||| ||||| || ||| |||| ||||| ||||||||||||| ||||||||    
T  11502166 tgagtttaaagtaaaatgatttattttttaatatatttaagtaaaagtgagttaaacaataa 11502227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 37641668 - 37641611
Alignment:
Q  394 gaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    ||||||||||||| | ||||||  ||| |||||  |||||||||||||||||||||||    
T  37641668 gaaagtaaagtgacttatgtttggataaatttacctaaaagtgagttgaacaataaat 37641611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 388 - 501
Target Start/End: Complemental strand, 44439378 - 44439265
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    |||||| || ||||||||||| ||||||  |||  ||||||||||||||||||||||||||||| || |||| ||||||||||||| ||| ||| ||| |    
T  44439378 tgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctcc 44439279  T
Q  488 aatttctagcttca 501  Q
    || || ||||||||    
T  44439278 aaattttagcttca 44439265  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 390 - 473
Target Start/End: Complemental strand, 33502356 - 33502276
Alignment:
Q  390 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 473  Q
    ||||||| |||||||||||  |||||  |||||||   ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  33502356 agttgaatgtaaagtgatttgtgtttggatacatt---gtaaaagtgagttgaactataaatatgtgtgtaaaaatcaatttta 33502276  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 15220822 - 15220885
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    ||||||||| ||||||||||| ||||||  ||||||| |||| |||||||||||||||||||||    
T  15220822 tgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaataaat 15220885  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 400 - 535
Target Start/End: Complemental strand, 22536110 - 22535976
Alignment:
Q  400 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagctt 499  Q
    |||||||||  |||||  |||||||||||||||| |||||| ||| ||||||||| ||| |||||| |||| || ||| ||| ||||||| |||||  ||    
T  22536110 aaagtgatttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagcttcaaattctaaatt 22536011  T
Q  500 catgtattaatcaattctgtacgcaaaatcaattct 535  Q
    || |||  ||||||||||  | ||||||||||||||    
T  22536010 caagta-gaatcaattctaaaggcaaaatcaattct 22535976  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 418 - 501
Target Start/End: Complemental strand, 42982638 - 42982555
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    ||||||| |||||||||||||||| | ||||||| || ||||||||||||||| |  ||| ||| ||| |||||||||||||||    
T  42982638 atacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttca 42982555  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 388 - 481
Target Start/End: Complemental strand, 4383095 - 4383002
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaa 481  Q
    |||||||||||||| ||| || ||| ||| ||| ||||||||||| ||| ||||||| |||||| | ||||||| |||||||| || |||||||    
T  4383095 tgagttgaaagtaatgtggtttatgattctatatatttatgtaaatgtgggttgaactataaattttggtgtaataatcaattctagaattaaa 4383002  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 388 - 464
Target Start/End: Original strand, 1976825 - 1976901
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaa 464  Q
    ||||||||| |||||| || | ||||||  ||||||| ||||||||||||||| |||||||||| || |||||||||    
T  1976825 tgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagtgtaaaaa 1976901  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 390 - 501
Target Start/End: Original strand, 4894120 - 4894231
Alignment:
Q  390 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaa 489  Q
    ||||||| ||||||||||| ||||||  ||||||| || ||||||||| ||||| ||||||| || || ||| |||||||| || ||| ||| ||| | |    
T  4894120 agttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatttgagtataataatcaattatagaatcaaaagctacga 4894219  T
Q  490 tttctagcttca 501  Q
    ||||||| ||||    
T  4894220 tttctagtttca 4894231  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 417 - 452
Target Start/End: Complemental strand, 38074504 - 38074469
Alignment:
Q  417 aatacatttatgtaaaagtgagttgaacaataaata 452  Q
    ||||||||||||||||||||||||||||||||||||    
T  38074504 aatacatttatgtaaaagtgagttgaacaataaata 38074469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 399 - 470
Target Start/End: Complemental strand, 42741089 - 42741019
Alignment:
Q  399 taaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||||  ||||| |||||||| |||||||||||||||| ||| ||||| || |||||||||||||||    
T  42741089 taaagtgatttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaatt 42741019  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Complemental strand, 9605280 - 9605247
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaat 451  Q
    ||||||||||||||||||||||||||||||||||    
T  9605280 atacatttatgtaaaagtgagttgaacaataaat 9605247  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 37420164 - 37420238
Alignment:
Q  398 gtaaagtgattcatgtttcaatacatt--tatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||| ||| ||||||||||| ||   || |||||||||||||||| ||||||| || |||||||||||||||    
T  37420164 gtaaagtaatttatgtttcaatatatacgtaagtaaaagtgagttgaataataaatttgagtgtaaaaatcaatt 37420238  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 448
Target Start/End: Complemental strand, 37519967 - 37519904
Alignment:
Q  385 aaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 448  Q
    |||||| |||||||||||||| || |  ||| ||||||||||| |||||| |||||||||||||    
T  37519967 aaatgatttgaaagtaaagtggtttacatttgaatacatttatttaaaagcgagttgaacaata 37519904  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 429 - 467
Target Start/End: Complemental strand, 32307167 - 32307129
Alignment:
Q  429 taaaagtgagttgaacaataaatatgggtgtaaaaatca 467  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  32307167 taaaagtgagttgaacaataaatataagtgtaaaaatca 32307129  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 429 - 467
Target Start/End: Original strand, 32798510 - 32798548
Alignment:
Q  429 taaaagtgagttgaacaataaatatgggtgtaaaaatca 467  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  32798510 taaaagtgagttgaacaataaatataagtgtaaaaatca 32798548  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 384 - 450
Target Start/End: Original strand, 40401600 - 40401666
Alignment:
Q  384 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaa 450  Q
    ||||||||||||| ||| | | ||| ||||||  ||||||| |||||||||| ||||||||||||||    
T  40401600 aaaatgagttgaaggtagactaatttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 388 - 533
Target Start/End: Original strand, 3476390 - 3476535
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    |||| ||||||| |||||||  ||||||  ||||||||||  | |||| |||||||||||| || ||  ||||||||| |||| || ||| ||| |||      
T  3476390 tgagctgaaagtgaagtgatatatgtttagatacatttatacacaagttagttgaacaatacatttgaatgtaaaaataaattctagaatcaaaagctct 3476489  T
Q  488 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaatt 533  Q
    ||||| |||||| | ||   ||||||||||| | ||||||||||||    
T  3476490 aatttttagctttaagttagaatcaattctggaggcaaaatcaatt 3476535  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 11504035 - 11504084
Alignment:
Q  400 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 449  Q
    |||||||||  ||||| |||||||| ||||||||||||||||||| ||||    
T  11504035 aaagtgatttgtgttttaatacattcatgtaaaagtgagttgaactataa 11504084  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 400 - 501
Target Start/End: Original strand, 33019129 - 33019230
Alignment:
Q  400 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagctt 499  Q
    |||||||||  |||||  || |||| ||||||||||||||||||| |||||| |  |||| |||||||||| || ||  ||| ||| ||| |||||||||    
T  33019129 aaagtgatttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagctt 33019228  T
Q  500 ca 501  Q
    ||    
T  33019229 ca 33019230  T

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Target: chr4 (Bit Score: 48; Significance: 7e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 418 - 501
Target Start/End: Complemental strand, 10185288 - 10185205
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    ||||||| ||||||||||||||| |||||||||| || ||||||| |||||||||| ||| ||| ||||||||||||| |||||    
T  10185288 atacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttctaccttca 10185205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 418 - 535
Target Start/End: Original strand, 32818361 - 32818477
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattct 517  Q
    ||||||| |||||||||| |||||||| |||||| || ||| ||||||||||| || ||| ||| ||| ||| |||||||||||  ||  ||||||||||    
T  32818361 atacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaata-gaatcaattct 32818459  T
Q  518 gtacgcaaaatcaattct 535  Q
    | | ||||||||||||||    
T  32818460 ggaggcaaaatcaattct 32818477  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 426 - 501
Target Start/End: Complemental strand, 33844063 - 33843988
Alignment:
Q  426 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    |||||||| | ||||||||||||||| || |||| ||||||||||||| ||| ||| ||| |||||||||||||||    
T  33844063 atgtaaaaataagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagcttca 33843988  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 420 - 493
Target Start/End: Complemental strand, 4243479 - 4243406
Alignment:
Q  420 acatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttc 493  Q
    ||||| |||||||||||||| ||||||||||| || ||||||||||||||| || ||| ||| ||| |||||||    
T  4243479 acattgatgtaaaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagctccaatttc 4243406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 25319170 - 25319109
Alignment:
Q  390 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    ||||||| |||||||  || ||||||| ||||||||| ||||||||||||||||||||||||    
T  25319170 agttgaatgtaaagttttttatgtttcgatacatttacgtaaaagtgagttgaacaataaat 25319109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 27096562 - 27096622
Alignment:
Q  391 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    |||||| |||| |||||| |||||| |||| ||||||||||||||| ||||||||||||||    
T  27096562 gttgaatgtaaggtgatttatgtttgaatatatttatgtaaaagtgtgttgaacaataaat 27096622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 424 - 468
Target Start/End: Complemental strand, 32100380 - 32100336
Alignment:
Q  424 ttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaa 468  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  32100380 ttatgtaaaagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 411 - 483
Target Start/End: Complemental strand, 39386734 - 39386662
Alignment:
Q  411 tgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatg 483  Q
    ||||| |||| ||| |||||||||||||||||||  |||||||| |||| |||||||||| || |||||||||    
T  39386734 tgtttaaatatattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatg 39386662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 382 - 449
Target Start/End: Original strand, 17898083 - 17898150
Alignment:
Q  382 tgaaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataa 449  Q
    ||||| ||||||||| ||||||||||| ||||||  ||| ||||| |||||||||| |||||||||||    
T  17898083 tgaaagtgagttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtgaattgaacaataa 17898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 388 - 467
Target Start/End: Complemental strand, 22683988 - 22683909
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 467  Q
    ||||||||||||||| || || ||||||  | ||||||||||||||| |||||||||||||||| |   |||||||||||    
T  22683988 tgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaacaataaatttcaatgtaaaaatca 22683909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 392 - 506
Target Start/End: Complemental strand, 37439263 - 37439151
Alignment:
Q  392 ttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatt 491  Q
    ||||| ||||| | ||| |||||| |||||  ||||||| |||  ||||||||||||||  || ||||||||||||||| || ||||||| |||  ||||    
T  37439263 ttgaaggtaaaataatttatgtttaaatactattatgtataag--agttgaacaataaaattgagtgtaaaaatcaattatagaattaaaagctataatt 37439166  T
Q  492 tctagcttcatgtat 506  Q
    |||||||||| ||||    
T  37439165 tctagcttcaagtat 37439151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 389 - 501
Target Start/End: Complemental strand, 22250349 - 22250237
Alignment:
Q  389 gagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttca 488  Q
    |||||||| || |||||||| |  |||  ||||||| |||||||||||| | ||||||||||| || || | |||| |||||| | ||| ||| ||||||    
T  22250349 gagttgaatgtgaagtgatttacatttggatacattcatgtaaaagtgaatcgaacaataaatttgagtattaaaagcaatttcagaatcaaaagcttca 22250250  T
Q  489 atttctagcttca 501  Q
    |||||| ||||||    
T  22250249 atttcttgcttca 22250237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 28178802 - 28178869
Alignment:
Q  384 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    ||||| ||||||| ||||||||||| ||| |||||||| || || |||| || |||||||||||||||    
T  28178802 aaaattagttgaatgtaaagtgattaatgcttcaatactttaatataaatgtaagttgaacaataaat 28178869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 33843835 - 33843772
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaat 451  Q
    ||||||| | ||||||||||| ||||||  ||| ||| |||||| |||||||||||||||||||    
T  33843835 tgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaat 33843772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 470
Target Start/End: Original strand, 41751244 - 41751315
Alignment:
Q  399 taaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    |||||||||| |||||| |||||||| |||||||| ||| || |||||||||| |  || ||||||||||||    
T  41751244 taaagtgattaatgtttgaatacattcatgtaaaactgaattaaacaataaatttaagtttaaaaatcaatt 41751315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 477
Target Start/End: Original strand, 47596296 - 47596351
Alignment:
Q  422 atttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataat 477  Q
    |||||||||||| || | | |||||||||| || ||||||||||||||||||||||    
T  47596296 atttatgtaaaaatgggctaaacaataaatttgagtgtaaaaatcaattttataat 47596351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 952 - 1034
Target Start/End: Complemental strand, 16866499 - 16866417
Alignment:
Q  952 aagtggaacctgacatcaatgtgtttactccttccatgcatgactggatttttcgacaactttgttgatgaactattgtcaca 1034  Q
    ||||| ||||||| ||| |||||||| |  |||||||||||||||||||| || || | |||| ||||||| ||||| |||||    
T  16866499 aagtgaaacctgagatctatgtgtttgcatcttccatgcatgactggattcttagatagctttattgatgagctattatcaca 16866417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 31012732 - 31012793
Alignment:
Q  421 catttatgtaaaagtgagttgaacaataaatatgggtgt-aaaaatcaattttataattaaa 481  Q
    ||||||||||||| |||||||||| ||||||||  |||| ||||||||||| || |||||||    
T  31012732 catttatgtaaaaatgagttgaactataaatatatgtgtgaaaaatcaattctaaaattaaa 31012793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 388 - 470
Target Start/End: Original strand, 14075 - 14157
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||| ||||||||||| ||||||  ||||||| |||| ||||||||||||| ||||||| || |||||||||||||||    
T  14075 tgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaatt 14157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 384 - 501
Target Start/End: Original strand, 27499319 - 27499435
Alignment:
Q  384 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatg 483  Q
    ||||||| |||||  |||||||||| ||| || |||| ||||| |||||||||| ||||||||||| | |  || | ||||||||||||| ||||||| |    
T  27499319 aaaatgaattgaagataaagtgatttatggtttaatatatttacgtaaaagtgatttgaacaataatt-taagtattaaaatcaattttagaattaaaag 27499417  T
Q  484 cttcaatttctagcttca 501  Q
    |||||||||||| |||||    
T  27499418 cttcaatttctaacttca 27499435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 390 - 470
Target Start/End: Original strand, 46853497 - 46853577
Alignment:
Q  390 agttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||| ||||||||||| ||||    ||| |||||||||||||||||||||||||||||| || |||| ||||||||||    
T  46853497 agttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaatt 46853577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 388 - 501
Target Start/End: Complemental strand, 3776646 - 3776533
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| ||||||||||| ||| ||  ||||||| ||||||||||||||| | ||| |||| || |||||||||| |||| || ||| | | ||| |    
T  3776646 tgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaattaattctagaatcagaagctac 3776547  T
Q  488 aatttctagcttca 501  Q
    ||||||||| ||||    
T  3776546 aatttctagattca 3776533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 4526224 - 4526171
Alignment:
Q  420 acatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 473  Q
    ||||||||||||||||| ||||||| |||||| || ||||||||||||||||||    
T  4526224 acatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaatttta 4526171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 388 - 501
Target Start/End: Original strand, 35264372 - 35264485
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||||||||||||| | ||||||   |||||| |||||||| ||| ||||||||||||| |  |||| |||||||||| || ||| ||| |||      
T  35264372 tgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaatcaaaagctct 35264471  T
Q  488 aatttctagcttca 501  Q
    ||||||||| ||||    
T  35264472 aatttctagtttca 35264485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 388 - 533
Target Start/End: Original strand, 37334995 - 37335139
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| ||||||||||| |||| | |||||||| || ||||| ||||||||||||| |||    ||||||||||||||| || ||| ||| ||| |    
T  37334995 tgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaagctac 37335094  T
Q  488 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaatt 533  Q
     ||||||| ||||  |||  ||||||||||  | ||||||||||||    
T  37335095 gatttctaacttctagta-aaatcaattctcgaggcaaaatcaatt 37335139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 30300985 - 30301073
Alignment:
Q  414 ttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataatt-aaatgcttcaatttctagcttca 501  Q
    ||||||| ||||||||||||||| |||||||||||||| || |||| |||| ||||| || |||| |||  || |||||||||||||||    
T  30300985 ttcaataaatttatgtaaaagtgggttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttca 30301073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 417 - 473
Target Start/End: Complemental strand, 37703194 - 37703138
Alignment:
Q  417 aatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 473  Q
    |||| |||||||||||||||| ||||||||||||| || |||||||||| |||||||    
T  37703194 aatatatttatgtaaaagtgaattgaacaataaatttgagtgtaaaaattaatttta 37703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 410 - 467
Target Start/End: Complemental strand, 53906727 - 53906670
Alignment:
Q  410 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 467  Q
    ||||||||||| ||| |||||||||| | ||||||||||||| | |||||||||||||    
T  53906727 atgtttcaatatattcatgtaaaagtaaattgaacaataaatttaggtgtaaaaatca 53906670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 27266765 - 27266837
Alignment:
Q  398 gtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||||| ||||||  |||  || |||||||||| ||||||||||||||| || |||||||||| ||||    
T  27266765 gtaaagtgatttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaatt 27266837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 943 - 1010
Target Start/End: Original strand, 9579478 - 9579545
Alignment:
Q  943 tcacgaagaaagtggaacctgacatcaatgtgtttactccttccatgcatgactggatttttcgacaa 1010  Q
    ||||| ||||| || ||||| ||||||||||||||||| |||||||| |  ||||||||||| |||||    
T  9579478 tcacggagaaaatgaaacctcacatcaatgtgtttacttcttccatgtagaactggattttttgacaa 9579545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 535
Target Start/End: Complemental strand, 35058445 - 35058339
Alignment:
Q  429 taaaagtgagttgaacaataa-atatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaaaa 527  Q
    ||||||||||||||||||||| || || |||| |||||||||| || ||| ||| |||  ||||||||||| || |||  ||||||||||  | ||||||    
T  35058445 taaaagtgagttgaacaataatatttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagta-gaatcaattcttgaggcaaaa 35058347  T
Q  528 tcaattct 535  Q
    ||||||||    
T  35058346 tcaattct 35058339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 535
Target Start/End: Complemental strand, 51285694 - 51285547
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttc 487  Q
    ||||||||| ||||||| ||||||| ||  ||||||| ||||||||| | ||| ||||| |||| || ||| ||||||||||| || ||| ||| |||      
T  51285694 tgagttgaatgtaaagtaattcatgcttggatacattcatgtaaaagcgggttaaacaacaaatttgagtgcaaaaatcaattctagaatcaaaagctgt 51285595  T
Q  488 aatttctagcttcatgtattaatcaattctgtacgcaaaatcaattct 535  Q
     |||| |||||||| || |   |||||| || | ||||||||||||||    
T  51285594 gatttttagcttcaagtttgtgtcaattgtggaggcaaaatcaattct 51285547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 388 - 470
Target Start/End: Original strand, 35253428 - 35253510
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    |||||| || ||||||||||| || |||  | ||| | ||||||||||||||||||  |||||| || |||||||||||||||    
T  35253428 tgagtttaaggtaaagtgatttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaatt 35253510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 421 - 535
Target Start/End: Complemental strand, 36302274 - 36302161
Alignment:
Q  421 catttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgta 520  Q
    |||| |||||||||||||||||||||||||| |  |||  |||||||||| || ||| |||  || |||| ||||||||||  ||  |||||| |||| |    
T  36302274 cattcatgtaaaagtgagttgaacaataaatttaagtgctaaaatcaattctaaaatcaaaatctccaatctctagcttcaaata-gaatcaactctgaa 36302176  T
Q  521 cgcaaaatcaattct 535  Q
     ||||||||||||||    
T  36302175 ggcaaaatcaattct 36302161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 388 - 470
Target Start/End: Original strand, 41596110 - 41596192
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    ||||||||| |||||||||||  |||||  ||||||| ||| ||||||||||  ||| |||||  || |||||||||||||||    
T  41596110 tgagttgaatgtaaagtgatttctgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaatt 41596192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 952 - 1013
Target Start/End: Complemental strand, 1374201 - 1374140
Alignment:
Q  952 aagtggaacctgacatcaatgtgtttactccttccatgcatgactggatttttcgacaactt 1013  Q
    ||||||||||| ||||| |||||||| || ||||| ||||| || |||||||| ||||||||    
T  1374201 aagtggaacctcacatcgatgtgtttgcttcttccgtgcataacaggatttttggacaactt 1374140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 400 - 533
Target Start/End: Original strand, 25359547 - 25359679
Alignment:
Q  400 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagctt 499  Q
    |||||||||  |||||  ||||||| || || |||||| || ||||||||||||| |||| |||||||||| || ||| |||  || ||| ||||| |||    
T  25359547 aaagtgatttgtgtttggatacattcatatagaagtgattttaacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaactt 25359646  T
Q  500 catgtattaatcaattctgtacgcaaaatcaatt 533  Q
    || |||  ||||||||||| | ||| ||||||||    
T  25359647 caagta-gaatcaattctggaggcagaatcaatt 25359679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 117457 - 117517
Alignment:
Q  388 tgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaata 448  Q
    ||||||||| ||||| ||||||||||||  |||||| |||||||||||||||| |||||||    
T  117457 tgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaata 117517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 10898807 - 10898763
Alignment:
Q  426 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    |||||||||||||||||||||||||| || |||||||||||||||    
T  10898807 atgtaaaagtgagttgaacaataaatttgtgtgtaaaaatcaatt 10898763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 422 - 473
Target Start/End: Original strand, 8506701 - 8506752
Alignment:
Q  422 atttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 473  Q
    |||||||||||||||| ||||||||||||| || |||||||| |||||||||    
T  8506701 atttatgtaaaagtgatttgaacaataaatgtgagtgtaaaactcaatttta 8506752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 391 - 470
Target Start/End: Complemental strand, 34443096 - 34443017
Alignment:
Q  391 gttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    |||||||||||| | ||| |||||| ||||||||||| ||||||||| ||||| ||||||| ||  ||| ||||||||||    
T  34443096 gttgaaagtaaaataatttatgtttgaatacatttatataaaagtgaattgaaaaataaatttgtttgttaaaatcaatt 34443017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 42858209 - 42858139
Alignment:
Q  411 tgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaa 481  Q
    ||||| |||| ||| ||||||||||||||||||| |||||| || |||| |||||||||| || |||||||    
T  42858209 tgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaa 42858139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 473
Target Start/End: Complemental strand, 35108367 - 35108278
Alignment:
Q  384 aaaatgagttgaaagtaaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 473  Q
    ||||| |||||||| ||||||||||  ||||| |||| | | ||||||| ||| ||||||| |||||| || |||||||||||| |||||    
T  35108367 aaaattagttgaaaataaagtgatttgtgtttgaataaactcatgtaaatgtgtgttgaactataaatttgcgtgtaaaaatcagtttta 35108278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 426 - 535
Target Start/End: Complemental strand, 36640023 - 36639915
Alignment:
Q  426 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaattctgtacgcaa 525  Q
    ||||||||||||| |||||| ||||| || ||||||||| ||||| || ||||| | ||| ||||||| ||||||| |||  |||| ||| || | ||||    
T  36640023 atgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaattagaagctacaatttccagcttcaagta-gaatctattttggaggcaa 36639925  T
Q  526 aatcaattct 535  Q
    ||||||||||    
T  36639924 aatcaattct 36639915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 37886021 - 37886078
Alignment:
Q  410 atgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatca 467  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |   |||||||||||    
T  37886021 atgtttgaatacatttgtgtaaaagtgagttgaacaataaatttcaatgtaaaaatca 37886078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 501
Target Start/End: Original strand, 2937910 - 2937993
Alignment:
Q  418 atacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttca 501  Q
    |||||||  ||||||||| ||||||||| ||||| ||  | |||||||||||| || ||||||| ||||||| |||||| ||||    
T  2937910 atacattcgtgtaaaagtaagttgaacattaaatttgaatttaaaaatcaattatagaattaaaagcttcaaattctaggttca 2937993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 18851081 - 18851132
Alignment:
Q  426 atgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaattttataat 477  Q
    ||||||||||||||| ||| ||||||||| |||| |||||||||| ||||||    
T  18851081 atgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataat 18851132  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 401 - 470
Target Start/End: Complemental strand, 15368584 - 15368515
Alignment:
Q  401 aagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatt 470  Q
    |||||||| |||||| |||||||  |||||||||||| |||||||| | || || ||||||| |||||||    
T  15368584 aagtgatttatgtttgaatacatccatgtaaaagtgacttgaacaacatatttgagtgtaaagatcaatt 15368515  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 418 - 533
Target Start/End: Complemental strand, 31923 - 31806
Alignment:
Q  418 atacatttatgtaaaagtgagttg---aacaataaatatgggtgtaaaaatcaattttataattaaatgcttcaatttctagcttcatgtattaatcaat 514  Q
    ||||||||||||||||||||||||   ||| |||||||||  ||| ||||||||||  ||||| ||| ||| ||| | ||||||||| ||| ||||||||    
T  31923 atacatttatgtaaaagtgagttgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaatcctagcttcaagta-taatcaat 31825  T
Q  515 tctgtacgcaaaatcaatt 533  Q
    | || | ||| ||||||||    
T  31824 tttggaggcagaatcaatt 31806  T

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Target: scaffold0314 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 17245 - 17172
Alignment:
Q  400 aaagtgattcatgtttcaatacatttatgtaaaagtgagttgaacaataaatatgggtgtaaaaatcaatttta 473  Q
    ||||||||| |||||| |||||||| ||| ||| | |||||||| ||||||| |  ||||||||||| ||||||    
T  17245 aaagtgatttatgtttgaatacattaatgaaaacgggagttgaataataaatctcagtgtaaaaatctatttta 17172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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