View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_high_16 (Length: 321)
Name: NF0864_high_16
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 15768621 - 15768900
Alignment:
| Q |
13 |
aatatggagattgtagagagaatggttaaggtagctttggcatgtgttcaatataggccagaatcaagacctaaaatgagtgttgtggtacaaatgttgg |
112 |
Q |
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| T |
15768621 |
aatatggagattgtagagagaatggttaaggtagctttggcatgtgttcaatataggccagaatcaagacctaaaatgagtgttgtggtacaaatgttgg |
15768720 |
T |
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| Q |
113 |
aaggtttagttgaaatttcaaagcctttgaatccttttcaatatatgattgatggaacttcttcttatctttcaatgccaatatcacagatcaatactga |
212 |
Q |
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| T |
15768721 |
aaggtttagttgaaatttcaaagcctttgaatccttttcaatatatgattgatggaacttcttcttatctttcaatgccaatatcacagatcaatactga |
15768820 |
T |
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| Q |
213 |
tacaagtattggttctggctcttctgtgatggtaactgaatctagtgttgaaggtgttactcctataatgacgaagtacc |
292 |
Q |
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| T |
15768821 |
tacaagtattggttctggatcttctgttatggtaactgaatctagtgttgaaggtgttactcctataatgaccaagtacc |
15768900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 15773258 - 15773406
Alignment:
| Q |
19 |
gagattgtagagagaatggttaaggtagctttggcatgtgttcaatataggccagaatcaagacctaaaatgagtgttgtggtacaaatgttggaaggtt |
118 |
Q |
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| T |
15773258 |
gagattgctgagagaatgattaaggtagctttatggtgtgttcaatataggccagaattaaggcctataatgagtgttgtggtgaaaatgttagaaggtt |
15773357 |
T |
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| Q |
119 |
tagttgaaatttcaaagcctttgaatccttttcaatatatgattgatgg |
167 |
Q |
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| T |
15773358 |
cattagaaattccaaagacttttaacccatttcaacatttgattgatgg |
15773406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 15794710 - 15794563
Alignment:
| Q |
19 |
gagattgtagagagaatggttaaggtagctttggcatgtgttcaatataggccagaatcaagacctaaaatgagtgttgtggtacaaatgttggaaggtt |
118 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||| | ||| ||| |||| ||||||| ||| || ||||||||||||||| |
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| T |
15794710 |
gagattgctgagagaatggttaaggtagctttatggtgtgttcaatataggcaacaattaaggcctatgatgagtgatgttgtgaaaatgttggaaggtt |
15794611 |
T |
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| Q |
119 |
tagttgaaatttcaaagcctttgaatccttttcaatatatgattgatg |
166 |
Q |
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| T |
15794610 |
cattagaaattccaaagacttttaacccatttcaacatttgattgatg |
15794563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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