View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_high_18 (Length: 285)
Name: NF0864_high_18
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 23220285 - 23220105
Alignment:
| Q |
36 |
atgaaaatgggtgcagcatttttgtttatttctttgaggttgaaatttggagtgtggtcgttataaccaatggttcattcaaatgcagcattttgaaatt |
135 |
Q |
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| T |
23220285 |
atgaaaatgggtgcaacatttttgtttatttctttgaggttgaaatttggagtgtgggcgttataaccaatggttcatccaaatgcagcattttgaaaat |
23220186 |
T |
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| Q |
136 |
aagtataaattattgaaattaagttatgctcctagattttaccatccaactaactaaagttcgctgtgccatccaaactgtgcattt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23220185 |
-----taaattattgaaattaagttatgctcctagattttaccatccaactaact-aagttcgctgtgccatccaaactgtgcattt |
23220105 |
T |
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