View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_high_22 (Length: 275)
Name: NF0864_high_22
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 38841248 - 38841461
Alignment:
| Q |
41 |
agttggttagtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaat |
140 |
Q |
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| T |
38841248 |
agttggttagtgattgatgatcaactgggttttgaatgagtaaccttcttatgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaat |
38841347 |
T |
|
| Q |
141 |
agaagcatacatgttttttcttaaggaagtaattgatgagttagtttattagagcttgagttgtttttatattatcttagttgaggattatatataggga |
240 |
Q |
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| T |
38841348 |
agaagcatacatgttttttcttgaggaagtaattgatgagttagtttattagagcttgagttgtttttatgttatcttagttgaggattatatataggga |
38841447 |
T |
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| Q |
241 |
agttatatgatatt |
254 |
Q |
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|||||||||||||| |
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| T |
38841448 |
agttatatgatatt |
38841461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 41 - 247
Target Start/End: Original strand, 38865297 - 38865506
Alignment:
| Q |
41 |
agttggttagtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaat |
140 |
Q |
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|||| |||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || | ||||| |||||||||| | |
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| T |
38865297 |
agttagttagtgattgatgttcaattgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagt |
38865396 |
T |
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| Q |
141 |
aga---agcataca-tgttttttcttaaggaagtaattgatgagttagtttattagagcttgagttgtttttatattatcttagttgaggattatatata |
236 |
Q |
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| T |
38865397 |
agaagcagcatacattgttttttgttggggaactagttgat-agttatttaattagagattgagttgttggtatgttatcttagatgaggattatatata |
38865495 |
T |
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| Q |
237 |
gggaagttata |
247 |
Q |
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||||||||||| |
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| T |
38865496 |
gggaagttata |
38865506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 49 - 244
Target Start/End: Original strand, 38861874 - 38862068
Alignment:
| Q |
49 |
agtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaatagaagcat |
148 |
Q |
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| T |
38861874 |
agtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagttcatggagaagtggtgaagtaaaggaagtagaagcat |
38861973 |
T |
|
| Q |
149 |
aca-tgttttttcttaaggaagtaattgatgagttagtttattagagcttgagttgtttttatat--tatcttagttgaggattatatatagggaagtt |
244 |
Q |
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| T |
38861974 |
acattgttttttgttgggga---attttatgagttagttaattagagcttgagttgctgttatgttgtatcttagtt-aggggtatatatagggaagtt |
38862068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 38858991 - 38859099
Alignment:
| Q |
49 |
agtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaatagaagcat |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||| |||||| ||| ||||||||| |
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| T |
38858991 |
agtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcatgtagaagtggtgaagtaaaagaagtagaagcat |
38859090 |
T |
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| Q |
149 |
acatgtttt |
157 |
Q |
| |
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| T |
38859091 |
acatgtttt |
38859099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 38847053 - 38847198
Alignment:
| Q |
53 |
attgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaatagaagcataca- |
151 |
Q |
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| T |
38847053 |
attgatgatcaactgggttttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagtaaaagaagtagaagcatacat |
38847152 |
T |
|
| Q |
152 |
tgttttttcttaaggaagtaattgatgagttagtttattagagcttgag |
200 |
Q |
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|||||| | || ||| | |||||||||||||| ||||||||||||| |
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| T |
38847153 |
tgttttctgttgggga---atttgatgagttagttaattagagcttgag |
38847198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 38827466 - 38827638
Alignment:
| Q |
44 |
tggttagtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaataga |
143 |
Q |
| |
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||||| ||||||||| ||||| ||| ||||| | |||||||||||||||||| ||||| ||||||||||||| || | ||||| |||||| ||| |||| |
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| T |
38827466 |
tggttggtgattgataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagtaaaagaagtaga |
38827565 |
T |
|
| Q |
144 |
agcataca-tgttttttcttaaggaagtaattgatgagttagtttattagagcttga--gttgtttttatattatc |
216 |
Q |
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| T |
38827566 |
agcatacattgttttctgttgggga---atttgataagttagttaattagagcttgagggttgttgttatattatc |
38827638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 38850677 - 38850569
Alignment:
| Q |
44 |
tggttagtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaataga |
143 |
Q |
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||||| |||||||| ||||| ||| ||||| | |||||||||||||||||| ||||| ||||||||||||| || | ||||| ||| |||||| |||| |
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| T |
38850677 |
tggttggtgattgaaaatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagttaaggaagtaga |
38850578 |
T |
|
| Q |
144 |
agcatacat |
152 |
Q |
| |
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|| |||||| |
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| T |
38850577 |
agtatacat |
38850569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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