View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_high_4 (Length: 476)
Name: NF0864_high_4
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 29 - 476
Target Start/End: Complemental strand, 5233500 - 5233050
Alignment:
| Q |
29 |
acaatattcaccaaaatagtttggctttgtaaagtagtagtagtataaattatacaacatctctgcatccaatcttttggtgtaaacttgaactaccaga |
128 |
Q |
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| T |
5233500 |
acaatattcaccaaaatagtttggctttgtaaagtagtagta---taaattatacaacatctctgcatccaatcttttggtgtaaacttgaactaccaga |
5233404 |
T |
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| Q |
129 |
aaaagatggagcatcgatgttaaatatgaaacactttacacacgtgaatataatgataaaatttaaaccatattaatttggtaatttggtagaatcaaat |
228 |
Q |
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| T |
5233403 |
aaaagatggagcatcaatgttaaatatgaaacattttacacacgtgaatataataataaaatttaaaccatattaatttggtaatttggtagaatcaaat |
5233304 |
T |
|
| Q |
229 |
aatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgac |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233303 |
aatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgac |
5233204 |
T |
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| Q |
329 |
cgaggaatatgatacctatccaaagatt---nnnnnnnnnnnnnnttactctcataatcttcgattacttacatcattattgtaaagtaccacgttatat |
425 |
Q |
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| T |
5233203 |
cgaggaatatgatacctatccaaagatttaaaaaaaaaaaaaaaattactctcataatcttcgattacttacatcattattgtaaagtaccacgttatat |
5233104 |
T |
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| Q |
426 |
gaaatcttaccatttctg---tgctcctcctcaatttgtcctgcattttggatt |
476 |
Q |
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| T |
5233103 |
gaaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggatt |
5233050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 354
Target Start/End: Complemental strand, 17129208 - 17129075
Alignment:
| Q |
221 |
aatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactca |
320 |
Q |
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|||||||| | || |||| ||||||||||||||| ||||||||| |||||||| |||||||||||||| | ||||||||||||||||| || | ||| |
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| T |
17129208 |
aatcaaatgagcacacttcatgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttca |
17129109 |
T |
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| Q |
321 |
accatgaccgaggaatatgatacctatccaaaga |
354 |
Q |
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|||||| ||||||||||||||||| || ||||| |
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| T |
17129108 |
gccatgatcgaggaatatgatacctgtcgaaaga |
17129075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 52546538 - 52546585
Alignment:
| Q |
241 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
288 |
Q |
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| T |
52546538 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
52546585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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