View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_high_6 (Length: 401)
Name: NF0864_high_6
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Original strand, 11325318 - 11325684
Alignment:
| Q |
9 |
gaagaatattatataacgatcagaatattagttacttgtgttagtgaataacaaaatattagactcaaatatcagaattttgattatgaatgtaattaga |
108 |
Q |
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| T |
11325318 |
gaagaatattatataacgatcagaatattagttacttatgttagtgaataacaaaatattagactcaaatatcagacttttgattatgaatgtaattaga |
11325417 |
T |
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| Q |
109 |
gtgaccctcacagtgagagtattattcagcaataagagcattttctatactctgtataggttagacatcatatgaaaaagagcacaatatcaaggaatga |
208 |
Q |
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| T |
11325418 |
gtgaccctcacagtgagagtattattcagcaataagagcattttctatactctgtataggttagacatcatatgaaaaagagcacaatatcaaggaatga |
11325517 |
T |
|
| Q |
209 |
catgtaaaaatcagtggaaaccatttcagaagtctaatatgaattagaaaatcagaacatgttccaaaagtaagaacaaaagcataaaaagtaccttttc |
308 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11325518 |
catgtaaaaagcagtggaaaccatttcagaagtctaatatgaattagaaaatcagaacatgttccaaaagtaagaacaaaagcataaaaagtaccttttc |
11325617 |
T |
|
| Q |
309 |
tatttaaattatttttcaaattttcatccaaaatccacatc-aaagtacattatcatgtgaaaattg |
374 |
Q |
| |
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| T |
11325618 |
tatttaaattatttttcaaattttcatccaaaatccacatcaaaaatacattatcatgtgaaaattg |
11325684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Original strand, 11483339 - 11483705
Alignment:
| Q |
9 |
gaagaatattatataacgatcagaatattagttacttgtgttagtgaataacaaaatattagactcaaatatcagaattttgattatgaatgtaattaga |
108 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11483339 |
gaagaatattatataacgatcagaatattagttacttatgttagtgaataacaaaatattagactcaaatatcagacttttgattatgaatgtaattaga |
11483438 |
T |
|
| Q |
109 |
gtgaccctcacagtgagagtattattcagcaataagagcattttctatactctgtataggttagacatcatatgaaaaagagcacaatatcaaggaatga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483439 |
gtgaccctcacagtgagagtattattcagcaataagagcattttctatactctgtataggttagacatcatatgaaaaagagcacaatatcaaggaatga |
11483538 |
T |
|
| Q |
209 |
catgtaaaaatcagtggaaaccatttcagaagtctaatatgaattagaaaatcagaacatgttccaaaagtaagaacaaaagcataaaaagtaccttttc |
308 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11483539 |
catgtaaaaagcagtggaaaccatttcagaagtctaatatgaattagaaaatcagaacatgttccaaaagtaagaacaaaagcataaaaagtaccttttc |
11483638 |
T |
|
| Q |
309 |
tatttaaattatttttcaaattttcatccaaaatccacatc-aaagtacattatcatgtgaaaattg |
374 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
11483639 |
tatttaaattatttttcaaattttcatccaaaatccacatcaaaaatacattatcatgtgaaaattg |
11483705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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