View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_low_10 (Length: 353)
Name: NF0864_low_10
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 353
Target Start/End: Original strand, 12956412 - 12956743
Alignment:
| Q |
22 |
atcatccaatgcctagtattccttcaccacatggaaatggccctccccttttaccttctccaacctctcaatttctcttgccttctccaactggttacat |
121 |
Q |
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| T |
12956412 |
atcatccaatgcctagtattccttcaccgcatggaaatggccctccccttttaccttctccaacctctcaatttctcttgccttctccaactggttacat |
12956511 |
T |
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| Q |
122 |
gaatttactgtcccctcggtcaccttatccactattgtcacccggctttcagtttccatcaccactacccaatttttcgttctcacccatggcacagtca |
221 |
Q |
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| T |
12956512 |
gaatttactgtcccctcggtcaccttatccactattgtcacccggctttcagtttccatcaccactacccaattttccgttctcacccatgggacagtca |
12956611 |
T |
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| Q |
222 |
ggaattttagggcctggccctcaaccaccaccttctcccggccttatgtttccattatctccttcaagcttcttcaccatgccaagtcctaggtggagag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12956612 |
ggaattttagggcctggccctcaaccaccaccttctcccggccttatgtttccattatctccttcaagcttcttcaccatgccaagtcctaggtggagag |
12956711 |
T |
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| Q |
322 |
atcaatagtcttctcaaattgtgcatacatgt |
353 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
12956712 |
atcaatagtcttctcaaattgtgcatacatgt |
12956743 |
T |
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