View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0864_low_15 (Length: 331)
Name: NF0864_low_15
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 32 - 318
Target Start/End: Original strand, 38852862 - 38853149
Alignment:
| Q |
32 |
tgtttgccttttaaaattgcagtcctcatcactcatgatccttaaatcctttttcaacagccacatcttgtcgacaaatcaaccttaaaagctccaagca |
131 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
38852862 |
tgtttgccttttgaaattgcagtcctcatcactcatgatccttaaatcctttttcaacagccacaccttgtctacaaatcaaccttaaaagctccaagca |
38852961 |
T |
|
| Q |
132 |
aatcaca-aaaacagttgccaaccaagtaacataaacaatgaagaatgagccctgagaagcaaaacccacataacttgtataacattattgccacagttt |
230 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38852962 |
aatcacagaaaacagttgccaaccaagtaacagaaacaatgaagaatgagccctgagaagcaaaacccacataacttgtataacattattgccacagttt |
38853061 |
T |
|
| Q |
231 |
ttgtcatccacctaaatggcagcatctacaccattaatattcacaaatgagaaatcagggtcctccaatttcactaccattggtgttc |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38853062 |
ttgtcatccacctaagtggcagcatctacaccattaatattcacaaatgagaaatcagggtcctccaatttcactaccattgatgttc |
38853149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 2212455 - 2212234
Alignment:
| Q |
32 |
tgtttgccttttaaaattgcagtcctcatcactcatgatccttaaatcctttttcaacagccacatcttgtcgacaaatcaaccttaaaagctccaagca |
131 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
|
|
| T |
2212455 |
tgtttgccttttgaaattgcagtcctcatcactcatgatccttaaatcctttttcaacagccacaccttgtctacaaatcaacattaaaagctccaagca |
2212356 |
T |
|
| Q |
132 |
aatcacaaaaa-cagttgccaaccaagtaacataaacaatgaagaatgagccctgagaagcaaaacccacataacttgtataacattattgccacagttt |
230 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
2212355 |
aatcacaaaaaacagttgccaatcaagtaacagaaacaatgaagaatgagccctgagaagcaaaacccacataacttgtatagcattattgccacacttt |
2212256 |
T |
|
| Q |
231 |
ttgtcatccacctaaatggcag |
252 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2212255 |
ttgtcatccacctaaatggcag |
2212234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 2253179 - 2253109
Alignment:
| Q |
248 |
ggcagcatctacaccattaatattcacaaatgagaaatcagggtcctccaatttcactaccattggtgttc |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2253179 |
ggcagcatcaacaccattaatattcacaaatgagaaatcagggtccttgaatttcactaccactggtgttc |
2253109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 268
Target Start/End: Original strand, 44786700 - 44786897
Alignment:
| Q |
79 |
cctttttcaacagccacatcttgtcgacaaatcaacc-----ttaaaagctccaagcaaatcacaaa-aacagttgccaaccaagtaacataaacaatga |
172 |
Q |
| |
|
|||||||||| ||||||| |||||| || |||||||| |||| ||| ||||| ||||| |||| |||||||||||||||||||||| || ||| | |
|
|
| T |
44786700 |
cctttttcaatagccacaccttgtctactaatcaaccctttcttaatagccccaagaaaatcccaaagaacagttgccaaccaagtaacagaaccaacgg |
44786799 |
T |
|
| Q |
173 |
aga-atgagccctgagaagcaaaacccacataacttgtataacattattgccacagtttttgtcatcca-cctaaatggcagcatctacaccattaat |
268 |
Q |
| |
|
| ||||||| ||||||||||||||||| |||||||||| ||||| || || || |||||||| ||| ||||||||||||| | | |||||||||| |
|
|
| T |
44786800 |
cgcgatgagccatgagaagcaaaacccacgtaacttgtatgacattcttaccgcaatttttgtccaccagcctaaatggcagcgtatgcaccattaat |
44786897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 268
Target Start/End: Original strand, 28334730 - 28334927
Alignment:
| Q |
79 |
cctttttcaacagccacatcttgtcgacaaatcaacc-----ttaaaagctccaagcaaatcacaaa-aacagttgccaaccaagtaacataaacaatga |
172 |
Q |
| |
|
|||||||||| ||||||| |||||| || |||||||| |||| ||| ||||| ||||| |||| ||||||||||||||||||| || || ||| | |
|
|
| T |
28334730 |
cctttttcaatagccacaccttgtctactaatcaaccctttcttaatagccccaagaaaatcccaaagaacagttgccaaccaagtatcagaatcaacgg |
28334829 |
T |
|
| Q |
173 |
aga-atgagccctgagaagcaaaacccacataacttgtataacattattgccacagtttttgtcatcca-cctaaatggcagcatctacaccattaat |
268 |
Q |
| |
|
| ||||||| ||||||||||||||||| |||||||||| ||||| || || | |||||||| ||| ||||||||||||| | | |||||||||| |
|
|
| T |
28334830 |
cgcgatgagccttgagaagcaaaacccacgtaacttgtatgacattcttaccgctatttttgtccaccagcctaaatggcagcgtatgcaccattaat |
28334927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 819 times since January 2019
Visitors: 6131