View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0864_low_17 (Length: 329)
Name: NF0864_low_17
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 40 - 214
Target Start/End: Original strand, 14356836 - 14357010
Alignment:
| Q |
40 |
agaacctgtgatccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaataactcctacaccaacattgaacaacaacaac |
139 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
14356836 |
agaaactgtgatccaccaaaatccttcctctttgaccatcaaacaaagaaaagaaaatttctcacaaatgactcgtacacctacattgaacaacaacaac |
14356935 |
T |
|
| Q |
140 |
gacactactcttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggtagtatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14356936 |
gacactactcttctgtctctcttccattttgcttctaacacagatcttcctccaattcttcatcttggtagtatg |
14357010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 14357053 - 14357122
Alignment:
| Q |
261 |
aattcatgttctataagctaggaattgattataaagttgcaat-ttttatgtatataaattaaaaggtca |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14357053 |
aattcatgttctataagctaggaattgattataaagttgcaatcttttatgtatataaattaaaaggtca |
14357122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 29658172 - 29658008
Alignment:
| Q |
50 |
atccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaataactcctacaccaacattgaacaacaacaacgacactactc |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29658172 |
atccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaatgattcgtacaccaacattgaacaacaacaacgacattactc |
29658073 |
T |
|
| Q |
150 |
ttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggtagtatg |
214 |
Q |
| |
|
|| ||||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
29658072 |
ttttgtctctcttccatttttcttttaacacagatctctctccaattcttcatcttggtagtatg |
29658008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 29657962 - 29657899
Alignment:
| Q |
261 |
aattcatgttctataagctaggaattgattataaagttgcaat-ttttatgtatataaattaaa |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29657962 |
aattcatgttctataagctaggaattgattataaagttgcaatcttttatgtatataaattaaa |
29657899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 5548368 - 5548201
Alignment:
| Q |
50 |
atccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaatttctcacaaataactcctacaccaacattgaacaacaacaacgacact---- |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||| |||||||||||||||||| |
|
|
| T |
5548368 |
atccaccaaaatccttcctctttgaccaccaaacaaagaaaagaaaagttctcacaaatgatgcgtacaccaacattcaacaacaacaacgacactctgc |
5548269 |
T |
|
| Q |
146 |
----actcttctgtctctcttccattttgcttctaacatagatcttcctccaattcttcatcttggta |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
5548268 |
atacactcttctgtctctcttccattttgcttccaacatagatctctctccaattcttcatcttggta |
5548201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 21730700 - 21730756
Alignment:
| Q |
155 |
tctctcttccattttgcttctaacatagatct-tc-ctccaattcttcatcttggta |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
21730700 |
tctctcttccattttgcttctaacacagatctctctctccaattcttcatcttggta |
21730756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 657 times since January 2019
Visitors: 6130