View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_low_21 (Length: 314)
Name: NF0864_low_21
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 46872827 - 46873103
Alignment:
| Q |
9 |
gaagaatatttggagtgctgaagaggttcaaacaatgggtggtgaagaagctattagtaatcatttgcaaagacaaggttcgttgacgctgccgcgaact |
108 |
Q |
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| T |
46872827 |
gaagaatatttggagtgctgaagaggttcaaacaatgggtggtgaagaagctattagtaatcatttgcaaagacaaggttcgttgacgctgccgcgaact |
46872926 |
T |
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| Q |
109 |
cttagtcagaaaacggttgatgaggtttggaaggatatttctaaggattatggtggtcctaatttggctgcaccaatgactcagagacaaccaactttgg |
208 |
Q |
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| T |
46872927 |
cttagtcagaaaacggttgatgaggtttggaaggatatttctaaggattatggtggtcctaatttggctgcaccaatgactcagagacaaccaactttgg |
46873026 |
T |
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| Q |
209 |
gggagatgactttggaagagtttttggttagagctggtgttgttagagaagatgctaagccaaatgatggtgttttt |
285 |
Q |
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| T |
46873027 |
gggagatgactttggaagaatttttggttagagctggtgttgttagagaagatgctaagccaaatgatggtgttttt |
46873103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 33598958 - 33598885
Alignment:
| Q |
188 |
ctcagagacaaccaactttgggggagatgactttggaagagtttttggttagagctggtgttgttagagaagat |
261 |
Q |
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| T |
33598958 |
ctcaaagacaaccaacattaggtgaagtgactttggaggagtttttggtgagagctggtgttgtgaaagaagat |
33598885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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