View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_low_22 (Length: 310)
Name: NF0864_low_22
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_22 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 171 - 310
Target Start/End: Complemental strand, 37133536 - 37133390
Alignment:
| Q |
171 |
actacttgtcatttctcaaccatttcatccaattcagtaattggcaaacttccaattctacttatt-------cttcaaataaaaatcacacaacatata |
263 |
Q |
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| T |
37133536 |
actacttgtcatttctcaaccatttcatctaattcagtaattggcaaacttccaattctacttattagttattcttcaaataaaaatcacacaacatata |
37133437 |
T |
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| Q |
264 |
agcttcacatatcgattatttaaattattgttacataattgagaact |
310 |
Q |
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| T |
37133436 |
agcttcacatatcgattatttaaattattgttacataattgagaact |
37133390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 37133719 - 37133579
Alignment:
| Q |
19 |
ggacatcatcactgtttaggtaagccttcacctctgatatacctaactcggaactcggaatcaataggtgctataaaagccattattatagatgcatgaa |
118 |
Q |
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| T |
37133719 |
ggacatcaacactgtttaggtaagccttcacctctgatatacctgactcggaa-------tcaataggtgctataaaagccattattatagatgcatgaa |
37133627 |
T |
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| Q |
119 |
gcgtgagactcaaatttgaagcaaaaaatataacaaaggaaaacaaaa |
166 |
Q |
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| T |
37133626 |
gcgtgagactcaaatttgaagcaaaaaatataacaaaggcaaacaaaa |
37133579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 47781492 - 47781572
Alignment:
| Q |
83 |
taggtgctataaaagccattattatagatgcatgaagcgtgagactcaaatttgaagcaaaaaatataacaaaggaaaaca |
163 |
Q |
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| T |
47781492 |
taggtgctataaaagccgttattattgacgcaaaaagcgtgagactcaaatttgaagcaaaaaatataaaaaaggcaaaca |
47781572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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