View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_low_3 (Length: 598)
Name: NF0864_low_3
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 29 - 594
Target Start/End: Complemental strand, 5233500 - 5232935
Alignment:
| Q |
29 |
acaatattcaccaaaatagtttggctttgtaaagtagtagtagtataaattatacaacatctctgcatccaatcttttggtgtaaacttgaactaccaga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233500 |
acaatattcaccaaaatagtttggctttgtaaagtagtagta---taaattatacaacatctctgcatccaatcttttggtgtaaacttgaactaccaga |
5233404 |
T |
|
| Q |
129 |
aaaagatggagcatcgatgttaaatatgaaacactttacacacgtgaatataatgataaaatttaaaccatattaatttggtaatttggtagaatcaaat |
228 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233403 |
aaaagatggagcatcaatgttaaatatgaaacattttacacacgtgaatataataataaaatttaaaccatattaatttggtaatttggtagaatcaaat |
5233304 |
T |
|
| Q |
229 |
aatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgac |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233303 |
aatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgac |
5233204 |
T |
|
| Q |
329 |
cgaggaatatgatacctatccaaagatt---nnnnnnnnnnnnnnttactctcataatcttcgattacttacatcattattgtaaagtaccacgttatat |
425 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233203 |
cgaggaatatgatacctatccaaagatttaaaaaaaaaaaaaaaattactctcataatcttcgattacttacatcattattgtaaagtaccacgttatat |
5233104 |
T |
|
| Q |
426 |
gaaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggattagtaaaagttccagcataattacattcatcacaattgccatgtgct |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5233103 |
gaaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggattagtaaaagttccagcataattacattcatcacaattgccatgtgct |
5233004 |
T |
|
| Q |
526 |
atatatgcaggccaatgacgaccaatgctttgatcgtttatccatatttcaccctttcctatgctactc |
594 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5233003 |
atatatgcaggccaatgacgaccaatgctttgatcgtttatccatatttcaccctttcccatgctactc |
5232935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 391 - 594
Target Start/End: Complemental strand, 17129047 - 17128847
Alignment:
| Q |
391 |
tacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggattagtaaaagttc |
490 |
Q |
| |
|
||||||||||||| |||||||||| || |||||| ||||||||||| ||||| |||| |||||||||||| ||||||||| || || ||||||| |
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| T |
17129047 |
tacttacatcattgttgtaaagtaaa---ttgtatgaattcttaccatttttgtgtgggttgtccacaatttgttctgcattttttatctgtgaaagttc |
17128951 |
T |
|
| Q |
491 |
cagcataattacattcatcacaattgccatgtgctatatatgcaggccaatgacgaccaatgctttgatcgtttatccatatttcaccctttcctatgct |
590 |
Q |
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| ||||||||||| ||||||| ||| | ||||||||||| |||||||| ||||||||||| ||| | || | |||||||||||||||||| || || |
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| T |
17128950 |
cggcataattacaactgccacaattaccacgagctatatatgccggccaatggcgaccaatgctctgaccattaacccatatttcaccctttcccatact |
17128851 |
T |
|
| Q |
591 |
actc |
594 |
Q |
| |
|
|||| |
|
|
| T |
17128850 |
actc |
17128847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 221 - 354
Target Start/End: Complemental strand, 17129208 - 17129075
Alignment:
| Q |
221 |
aatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactca |
320 |
Q |
| |
|
|||||||| | || |||| ||||||||||||||| ||||||||| |||||||| |||||||||||||| | ||||||||||||||||| || | ||| |
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| T |
17129208 |
aatcaaatgagcacacttcatgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttca |
17129109 |
T |
|
| Q |
321 |
accatgaccgaggaatatgatacctatccaaaga |
354 |
Q |
| |
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|||||| ||||||||||||||||| || ||||| |
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|
| T |
17129108 |
gccatgatcgaggaatatgatacctgtcgaaaga |
17129075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 52546538 - 52546585
Alignment:
| Q |
241 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
288 |
Q |
| |
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||||||||||||||| || |||||| |||||||||||||||||||||| |
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| T |
52546538 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
52546585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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