View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_low_31 (Length: 266)
Name: NF0864_low_31
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_31 |
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| [»] scaffold0559 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 40825981 - 40826172
Alignment:
| Q |
45 |
cccagcatccaaaagctagtaatctctgcaaaatttgattaaaaattaattaattaactaattaatgaatggtttatatatcatattactattagctagc |
144 |
Q |
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| T |
40825981 |
cccagcatccaaaagctagtaatctctgcaaaatttgattaaaaattaattaattaactaattaatgaatggtttatatatcatattactattagctagc |
40826080 |
T |
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| Q |
145 |
agagtggtatgatgtagtaccttttttattgtacagagaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcata |
236 |
Q |
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| T |
40826081 |
agagttgtatgatgtagtaccttttttattgtacagagaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcata |
40826172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 40805585 - 40805659
Alignment:
| Q |
162 |
taccttttttattgtacagagaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcata |
236 |
Q |
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| T |
40805585 |
tacctttttgatggtgcagagaacgtttccttttagattcatgagatttacttctcttccaccctttctgtcata |
40805659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 40805437 - 40805470
Alignment:
| Q |
45 |
cccagcatccaaaagctagtaatctctgcaaaat |
78 |
Q |
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| T |
40805437 |
cccaacatccaaaagctagtaatctctgcaaaat |
40805470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 3550 - 3742
Alignment:
| Q |
56 |
aaagctagtaatctctgcaaaattt-gattaaaaa--ttaattaattaactaa--ttaatgaatgg--tttatatatcatattactattagctagcagag |
148 |
Q |
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| T |
3550 |
aaagctagtaatctctgcaaaattttgatttaaaaatttaattaattaacttaatttaatgaattggttttatatatcatattactattagctagcagag |
3649 |
T |
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| Q |
149 |
tggtatgatgtagt-acctttttta--ttgtacagagaacatttcc--ttttagattcatgagagtaacttcccttccaccctttctgtcata |
236 |
Q |
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| T |
3650 |
ttgtatgatgtagttacctttttttatttgtacagagaacattttcctttttagattcatgagagtaacttcccttccaccctttctgtcata |
3742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 9045 - 8986
Alignment:
| Q |
178 |
cagagaacatttcctttt-agattcatgagagtaacttcccttccaccctttctgtcata |
236 |
Q |
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| T |
9045 |
cagagaacgtttcctttttagattcatgagatttacttctcttccaccctttctgtcata |
8986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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