View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0864_low_34 (Length: 253)

Name: NF0864_low_34
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0864_low_34
NF0864_low_34
[»] chr1 (4 HSPs)
chr1 (10-253)||(29443384-29443627)
chr1 (10-242)||(29423112-29423344)
chr1 (10-250)||(29453367-29453607)
chr1 (10-250)||(29467843-29468083)
[»] chr2 (27 HSPs)
chr2 (10-250)||(12018951-12019191)
chr2 (10-203)||(9320868-9321061)
chr2 (10-250)||(9284253-9284493)
chr2 (10-249)||(10352949-10353188)
chr2 (13-203)||(9328485-9328675)
chr2 (10-243)||(11987550-11987783)
chr2 (10-81)||(10347793-10347864)
chr2 (10-243)||(12012609-12012845)
chr2 (33-250)||(9315858-9316075)
chr2 (146-204)||(9061358-9061416)
chr2 (10-241)||(10335704-10335923)
chr2 (74-253)||(9364464-9364643)
chr2 (10-80)||(9061204-9061274)
chr2 (10-131)||(8573568-8573689)
chr2 (10-131)||(9065656-9065777)
chr2 (13-204)||(7115708-7115902)
chr2 (146-250)||(9291761-9291865)
chr2 (145-204)||(16268953-16269012)
chr2 (146-243)||(10371683-10371780)
chr2 (146-204)||(8573725-8573783)
chr2 (10-80)||(10371867-10371937)
chr2 (146-203)||(10347650-10347707)
chr2 (10-243)||(12006181-12006414)
chr2 (145-204)||(8579703-8579762)
chr2 (13-131)||(9291901-9292013)
chr2 (10-69)||(16269109-16269168)
chr2 (122-204)||(9065789-9065871)
[»] chr8 (1 HSPs)
chr8 (10-250)||(41966768-41967011)
[»] chr3 (1 HSPs)
chr3 (10-131)||(37462447-37462568)
[»] chr7 (5 HSPs)
chr7 (10-131)||(45237908-45238029)
chr7 (10-131)||(45243657-45243778)
chr7 (10-69)||(45230452-45230511)
chr7 (146-204)||(45230293-45230351)
chr7 (146-204)||(45243555-45243613)
[»] chr4 (1 HSPs)
chr4 (10-68)||(26574882-26574940)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 29443384 - 29443627
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443384 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 29443483  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443484 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 29443583  T
Q  210 gatcatgccatcatttgtgttggaagtcttgtacaaccttcttt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29443584 gatcatgccatcatttgtgttggaagtcttgtacaaccttcttt 29443627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 29423344 - 29423112
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||||| |||||| |||||||||    
T  29423344 aagaatatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgag 29423245  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
    |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||| |||| ||||||||||||   |     
T  29423244 cgatggaggtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 29423145  T
Q  210 gatcatgccatcatttgtgttggaagtcttgta 242  Q
    ||||| ||||| |||||||||||||||||||||    
T  29423144 gatcaagccatgatttgtgttggaagtcttgta 29423112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 29453367 - 29453607
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||| | ||||| ||  ||||| |||||||||    
T  29453367 aagaatatggatgtagagatagctggtgtgaactttttactttggcggaatcatgtttcattttacctttgaaaactttgtggcctttagcttattcgag 29453466  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||   |     
T  29453467 cgatggaagtatggttctgttggaagtagattgtgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttc 29453566  T
Q  210 gatcatgccatcatttgtgttggaagtcttgtacaaccttc 250  Q
    ||||| || || |||||||||||||||||||| | ||||||    
T  29453567 gatcaagctatgatttgtgttggaagtcttgtgccaccttc 29453607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 29467843 - 29468083
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| |  ||||||||||| |||||  |||  | ||||||||  |||||||||||||||    
T  29467843 aagaatatggatgtagagatagttggcgtaaactttttactttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgag 29467942  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
    |||| ||||||||||||||||  ||||||| | ||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||   ||    
T  29467943 cgatggaagtatggttctgtttgaagtagaccatgagaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttg 29468042  T
Q  210 gatcatgccatcatttgtgttggaagtcttgtacaaccttc 250  Q
     || | || || |||||||||||||||||||||| ||||||    
T  29468043 aatgaagctatgatttgtgttggaagtcttgtaccaccttc 29468083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 12018951 - 12019191
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||  ||||||||| |||  ||||||   |||||||||||||||    
T  12018951 aagaatatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagccctttaggttattcgag 12019050  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
     ||| |||  | |||| ||||| | ||| ||| | | | |||| ||||||||||| | |||||| |    |||||||||||||||||||||||||   |     
T  12019051 tgatggaaaaaaggttttgttggatgtaaatcataatatgctggtttggtatgatttgaagagtcagcaagttagttatgttgaaggaattcctaatttc 12019150  T
Q  210 gatcatgccatcatttgtgttggaagtcttgtacaaccttc 250  Q
    ||| | ||||| |||||||||||||||||||||| ||||||    
T  12019151 gatgaagccatgatttgtgttggaagtcttgtaccaccttc 12019191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 9321061 - 9320868
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||| | ||||||||| |||||||||||||||||| ||| | ||||||||| |  ||||||||||| | ||||||||  |||||||||||||||    
T  9321061 aagaatatggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgaggcctttaggttattcgag 9320962  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct 203  Q
     ||| |||  | |||| |||||   ||||||  |||||||||||||||||||||| | ||||||| |   ||||||||||||||||||||||||    
T  9320961 tgatggaaaaaaggttttgttgagggtagatgctgagaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcct 9320868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 9284253 - 9284493
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||| | ||||||||| ||||||||| |||||||||||| | ||||  | |||| ||||| ||||| | ||||||||  |||||||||||| ||    
T  9284253 aagaatatggttctagagatagttggtgtaaaatttttactttggttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctag 9284352  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
     ||| | |||| |||||| ||  || ||||| || |||||||| ||||||||||| | ||||||||    |||| ||||||||||||||||||||   ||    
T  9284353 tgatggtagtaaggttctattagaaatagattgtaagaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttg 9284452  T
Q  210 gatcatgccatcatttgtgttggaagtcttgtacaaccttc 250  Q
    ||| | || || |||||||||| ||||||||| | ||||||    
T  9284453 gatgaagctatgatttgtgttgaaagtcttgtgccaccttc 9284493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 10353188 - 10352949
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    ||||||||||||||||||| || |||||||||||||||||| ||| | |||| | ||||  ||||||||||  | |||||||| ||||||||||||||||    
T  10353188 aagaatatggatgtagagagagttggtgtaaactttttactgtggttaaatcttctttcgatttacctttgcaatctttgaggcttttaggttattcgag 10353089  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
     |||||||  | |||| |||||   ||||||  |||||| || |||||||||||| |  ||||| ||   |||||||||||| ||| ||||| ||   ||    
T  10353088 tgatagaaaaaaggttttgttgagggtagatgttgagaatctattttggtatgatttggagagtaaacaagttagttatgttcaagaaattcttaatttg 10352989  T
Q  210 gatcatgccatcatttgtgttggaagtcttgtacaacctt 249  Q
    ||| |  | || |||||||||||||||||||||| |||||    
T  10352988 gatgacactatgatttgtgttggaagtcttgtaccacctt 10352949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 9328675 - 9328485
Alignment:
Q  13 aatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcga 112  Q
    ||||||||| ||||||||| |||||||||||||||||| ||| | |||||||||||  ||||||||||| | ||||||||  ||||||||||| ||| ||    
T  9328675 aatatggatatagagatagttggtgtaaactttttactatggttaaatcgtgtttccatttacctttgaaatctttgaggcctttaggttatttgagtga 9328576  T
Q  113 tagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct 203  Q
    | |||  | |||| |||||   || |||  |||||||||||||| ||||||| | | ||||| |   ||||||||||||||||||||||||    
T  9328575 tggaaaaaaggttttgttgagggtggattttgagaagctgtttttgtatgattttaggagtgcacaagttagttatgttgaaggaattcct 9328485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 11987550 - 11987783
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||||||||||||||| |||||||||||||| || |||   ||||||||||||  ||||||||||| | |||||||   ||| |||||||||||    
T  11987550 aagaatatggatgtagagatagttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagccctttgggttattcgag 11987649  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
     ||| | |  | |||| ||||| |  |  |||   |||||||| ||||||||||| | |||||||||    ||||||||||||| ||||||||||   |     
T  11987650 tgatggtaaaaaggttttgttggatcttaatcacaagaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattc 11987749  T
Q  210 gatcatgccatcatttgtgttggaagtcttgtac 243  Q
    ||| | || || ||||||||||||||||||||||    
T  11987750 gatgaagctatgatttgtgttggaagtcttgtac 11987783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 10347864 - 10347793
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttga 81  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||  |||||||||||    
T  10347864 aagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttacctttga 10347793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 12012609 - 12012845
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||| |||| |||||| ||||||||||||||||||||||  ||||||||||||  ||||||||||| |  ||||||   ||| ||||||||||     
T  12012609 aagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgtttcgttttacctttgatatttttgagacctttgggttattcgaa 12012708  T
Q  110 cgatagaagtatgg------ttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct 203  Q
     ||| | |  ||||      || ||||| | ||| ||| | |||||||| ||||||||||| | |||||| ||   ||||||||||||||||||||||||    
T  12012709 tgatggtaaaatggttttgtttttgttggaggtaaatcataagaagctggtttggtatgatttgaagagtcaa---gttagttatgttgaaggaattcct 12012805  T
Q  204 agggtggatcatgccatcatttgtgttggaagtcttgtac 243  Q
    |   | ||| | || || ||||||||||||||||||||||    
T  12012806 aatttcgatgaagctatgatttgtgttggaagtcttgtac 12012845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 9316075 - 9315858
Alignment:
Q  33 tggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgc 132  Q
    |||||||||||||||||||||| | | || ||||||| |||| ||||||    ||||| |  |||||||||||| || ||  |||||| |||||| |||     
T  9316075 tggtgtaaactttttactttggttaattcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaaggttctattgg 9315976  T
Q  133 aagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttgg 232  Q
    || ||||| || ||||||||||||||| |||  | | |||||||   |||| |||||||||||||||| |||   ||||| | || || ||||||||||     
T  9315975 aaatagattgtaagaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttga 9315876  T
Q  233 aagtcttgtacaaccttc 250  Q
    ||||||||||| ||||||    
T  9315875 aagtcttgtaccaccttc 9315858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 9061358 - 9061416
Alignment:
Q  146 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 204  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  9061358 gaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattccta 9061416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 10335923 - 10335704
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||| | ||||||||||   |||            |||||||  |||||||||||  ||    
T  10335923 aagaatatggctgtagagatagttggtgtaaacattttactttggttaaatcgtgtttagattt------------tttgaggcctttaggttattgtag 10335836  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
     ||| |||||| |||||| ||| || | ||| || ||||| |||||||||||||| | |||||||||    ||||||||||||||||||||||||   ||    
T  10335835 tgatggaagtaaggttctattggaaatcgattgtaagaagttgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttg 10335736  T
Q  210 gatcatgccatcatttgtgttggaagtcttgt 241  Q
    ||| |  | || ||||||||||||||||||||    
T  10335735 gatgacactatgatttgtgttggaagtcttgt 10335704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 253
Target Start/End: Complemental strand, 9364643 - 9364464
Alignment:
Q  74 acctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagt 173  Q
    |||||||| | | ||||||  ||||||||||||||| ||| |||  | |||| | ||| || |||||||| |||||||||||||||| ||||||||||||    
T  9364643 acctttgaaatcgttgaggcctttaggttattcgagtgatggaaagaaggttttattggaaatagatcgtaagaagctgttttggtacgatctcaagagt 9364544  T
Q  174 gaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaaccttcttt 253  Q
    |||   |||| |  ||||  |||||||||||   || || | || || ||||||||||| |||||||||| |||||||||    
T  9364543 gaaaacgttactagtgttccaggaattcctaatatgaatgaagctatgatttgtgttggtagtcttgtaccaccttcttt 9364464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 9061204 - 9061274
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttg 80  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||| | |||||||||||| || |||||||    
T  9061204 aagactatggatctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaattcacctttg 9061274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 8573568 - 8573689
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||| | ||||||||| |||||||||||||||||||| | | |||||||||||| |  || ||| | | ||| ||||  |||||||||||| ||    
T  8573568 aagaatatggttctagagatagttggtgtaaactttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctag 8573667  T
Q  110 cgatagaagtatggttctgttg 131  Q
     ||| |||||| ||||||||||    
T  8573668 tgatggaagtaaggttctgttg 8573689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 9065656 - 9065777
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||   |||| ||||||  || || ||||| ||||| ||||  | ||||||||||  |    
T  9065656 aagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgacagcttcgaggcctctaggttattccgg 9065755  T
Q  110 cgatagaagtatggttctgttg 131  Q
     ||| |||||| ||||||||||    
T  9065756 tgatggaagtaaggttctgttg 9065777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 7115708 - 7115902
Alignment:
Q  13 aatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttg---aggattttaggttattcgag 109  Q
    ||||||||| |||||| |||||||||||||||||||| |||| | | |||||||||  |||| ||||||   | | |   |||  |||||||||||| ||    
T  7115708 aatatggatctagagacagctggtgtaaactttttacattggttaattcgtgtttcgatttatctttgattacatggttcaggcctttaggttattctag 7115807  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 204  Q
     ||| |||| | |||||| ||| || ||||| ||  ||||||| ||||||||||| | ||||| |||   ||||||| |||||||||||||||||    
T  7115808 tgatggaagcaaggttctattggaaatagattgtaggaagctggtttggtatgatttgaagagcgaacaagttagttgtgttgaaggaattccta 7115902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 9291865 - 9291761
Alignment:
Q  146 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaa 245  Q
    ||||||||||||||||||| | |||||||||    ||||||||||||||||||||||||   ||||| | || || |||||||||| ||||||| ||| |    
T  9291865 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 9291766  T
Q  246 ccttc 250  Q
    |||||    
T  9291765 ccttc 9291761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 16269012 - 16268953
Alignment:
Q  145 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 204  Q
    ||||| |||||||||||||| | ||||||||| | |||||||||||||||||||||||||    
T  16269012 agaagttgttttggtatgatttgaagagtgaacgagttagttatgttgaaggaattccta 16268953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 243
Target Start/End: Complemental strand, 10371780 - 10371683
Alignment:
Q  146 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtac 243  Q
    ||||||||||||||||||| | |||||||||   ||||||||||||||||||| | |||   ||||| |||| ||  |||||||||| ||||||||||    
T  10371780 gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtac 10371683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 8573725 - 8573783
Alignment:
Q  146 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 204  Q
    ||||||||||||||||||| | |||||||||   || ||||||||||||||||||||||    
T  8573725 gaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattccta 8573783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 10371937 - 10371867
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttg 80  Q
    |||||||||| | ||||||||| |||||||||||||||||||||| | ||||  ||||  |||||||||||    
T  10371937 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcaagtttgggtttacctttg 10371867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 10347707 - 10347650
Alignment:
Q  146 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct 203  Q
    ||||||||||||||||||| | |||||||||    |||||||||||||||||||||||    
T  10347707 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcct 10347650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 12006181 - 12006414
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||| |||| |||||| |||||||||||||||||||||   | ||||||||||  ||||||| ||| | ||||||    |||||||||||| ||    
T  12006181 aagaatatggttgtaaagatagttggtgtaaactttttactttgatgggatcgtgtttcgttttacctgtgatatctttgatccctttaggttattcaag 12006280  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtg 209  Q
     ||| |||  |   || ||||  | ||| ||| | |||||||| ||||||||||| | |||||||||   |||| |||  |||| |||||||| |   |     
T  12006281 tgatggaaaaaaacttttgtttgaggtaaatcataagaagctggtttggtatgatttgaagagtgaagaagttaattacattgagggaattccaaatttc 12006380  T
Q  210 gatcatgccatcatttgtgttggaagtcttgtac 243  Q
    ||| | || || ||||||||||||||||||||||    
T  12006381 gatgaagcgatgatttgtgttggaagtcttgtac 12006414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 8579703 - 8579762
Alignment:
Q  145 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 204  Q
    ||||||||||||||||||||||||| ||||||   |||| || |||| ||||||||||||    
T  8579703 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattccta 8579762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 9292013 - 9291901
Alignment:
Q  13 aatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcga 112  Q
    ||||||| | ||||||||| |||||||||||||||||||||| | ||||| | ||||      |||||| | ||||||||  |||| ||||||| || ||    
T  9292013 aatatggttctagagatagttggtgtaaactttttactttggttaaatcgcggttca------ctttgaaatctttgaggcctttatgttattctaggga 9291920  T
Q  113 tagaagtatggttctgttg 131  Q
    | |||||| ||||||||||    
T  9291919 tggaagtaaggttctgttg 9291901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 16269168 - 16269109
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttca 69  Q
    |||| ||||||| ||||||||| ||||| ||||||||||| |||| | ||||||||||||    
T  16269168 aagagtatggatatagagatagttggtgcaaactttttaccttggttaaatcgtgtttca 16269109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 9065789 - 9065871
Alignment:
Q  122 ggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 204  Q
    |||| ||||| | ||||||| | ||||||| |||||||||||| | |||||||||   |||| ||||||||||||| ||||||    
T  9065789 ggttttgttggaggtagatcatcagaagctcttttggtatgatttgaagagtgaacaagttatttatgttgaaggagttccta 9065871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 41966768 - 41967011
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| | |||| ||||||| || | |||||| | | ||| || ||||||||| ||| ||    
T  41966768 aagaatatcgatctagagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctag 41966867  T
Q  110 cgatagaagtatggttctgttgcaagtagatcgtga---gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagg 206  Q
    |||| |||| | |||||||||||||| |  |  |||   ||| ||||||||||||||| | |||||||||    ||| ||||||||||||||||||||      
T  41966868 cgatggaaggaaggttctgttgcaaggaattaatgatttgaaactgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaat 41966967  T
Q  207 gtggatcatgccatcatttgtgttggaagtcttgtacaaccttc 250  Q
     | ||| | |||||  ||||||||||||||||||||| ||||||    
T  41966968 tttgatgaagccatgttttgtgttggaagtcttgtaccaccttc 41967011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 37462568 - 37462447
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||||| ||||||||| ||||||||||||| |||| ||| | |||||||||||| || |||||||| | ||||||||  |||| ||||||| ||    
T  37462568 aagaatatggatctagagatagttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctag 37462469  T
Q  110 cgatagaagtatggttctgttg 131  Q
     ||| |||||| |||| |||||    
T  37462468 tgatggaagtaaggttttgttg 37462447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 45238029 - 45237908
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||| ||| | | ||| |   ||||||  |||| ||||||| ||    
T  45238029 aagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatctgaaattgttgaggcctttatgttattcaag 45237930  T
Q  110 cgatagaagtatggttctgttg 131  Q
    |||| ||||||  |||||||||    
T  45237929 cgatcgaagtaaagttctgttg 45237908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 45243778 - 45243657
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 109  Q
    |||||||||| | ||||||||  |||||||||||||||||||||| | |||||||||||| ||| | ||||  | ||||||||  |||| ||||||||||    
T  45243778 aagaatatggttctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgag 45243679  T
Q  110 cgatagaagtatggttctgttg 131  Q
     ||| ||||||  |||||||||    
T  45243678 tgatcgaagtaaagttctgttg 45243657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 45230511 - 45230452
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttca 69  Q
    |||||||||| | ||||||||| |||||||||||||||||||||| | ||||||| ||||    
T  45230511 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgtggttca 45230452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 45230351 - 45230293
Alignment:
Q  146 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 204  Q
    ||||||||||||||||||| |||||||||||   |||| | ||||| ||||||||||||    
T  45230351 gaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattccta 45230293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 45243613 - 45243555
Alignment:
Q  146 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 204  Q
    |||||||||||||||||||||||| ||||||    ||| ||||||| ||||||||||||    
T  45243613 gaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattccta 45243555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 26574940 - 26574882
Alignment:
Q  10 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttc 68  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| | |||||||||||    
T  26574940 aagaatatggatgtagagatagttggtgtaaactttttactgtggttaaatcgtgtttc 26574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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