View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0864_low_39 (Length: 251)

Name: NF0864_low_39
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0864_low_39
NF0864_low_39
[»] chr2 (4 HSPs)
chr2 (99-222)||(41407460-41407583)
chr2 (10-98)||(41407077-41407165)
chr2 (161-211)||(36534669-36534718)
chr2 (161-214)||(41880639-41880692)
[»] chr5 (1 HSPs)
chr5 (155-215)||(3255749-3255809)
[»] chr4 (3 HSPs)
chr4 (161-223)||(2987069-2987132)
chr4 (161-211)||(11389407-11389456)
chr4 (156-217)||(39178369-39178430)
[»] chr3 (1 HSPs)
chr3 (156-211)||(46886837-46886891)
[»] chr8 (3 HSPs)
chr8 (161-211)||(2840239-2840289)
chr8 (161-211)||(2844926-2844976)
chr8 (10-44)||(29973083-29973117)
[»] chr7 (2 HSPs)
chr7 (161-215)||(46945775-46945829)
chr7 (161-222)||(48131229-48131290)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 41407460 - 41407583
Alignment:
Q  99 gtttgtctttatgttttgtatacggctcggctccattgttttccaaacattgtctttggtcgtgtttggataaacaacttaggttgcagtttataacata 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41407460 gtttgtctttatgttttgtatacggctcggctccattgttttccaaacattgtctttggtcgtatttggataaacaacttaggttgcagtttataacata 41407559  T
Q  199 agtgcttatcatgtaagctcttat 222  Q
    ||||||||||||||||||||||||    
T  41407560 agtgcttatcatgtaagctcttat 41407583  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 41407077 - 41407165
Alignment:
Q  10 taagttgttttcataagctatccttaagagtttatttaaaaccatttaagaacatgccataagcttttttcacgagttcttccaatcat 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41407077 taagttgttttcataagctatccttaagagtttatttaaaaccatttaagaacatgccataagcttttttcacgagttcttccaatcat 41407165  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 36534669 - 36534718
Alignment:
Q  161 tgtttggataaacaacttaggttgcagtttataacataagtgcttatcatg 211  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  36534669 tgtttggataaacaacttatttt-cagtttataacataagtgcttatcatg 36534718  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 41880692 - 41880639
Alignment:
Q  161 tgtttggataaacaacttaggttgcagtttataacataagtgcttatcatgtaa 214  Q
    |||||||||||||||||||  |||||| ||||| || ||| |||||||||||||    
T  41880692 tgtttggataaacaacttactttgcagcttatagcacaagcgcttatcatgtaa 41880639  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 3255809 - 3255749
Alignment:
Q  155 tggtcgtgtttggataaacaacttaggttgcagtttataacataagtgcttatcatgtaag 215  Q
    ||||| |||||||||||||||||||  ||| |||||||| ||||| |||||||||| ||||    
T  3255809 tggtcctgtttggataaacaacttattttgaagtttatagcataaatgcttatcatataag 3255749  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 2987069 - 2987132
Alignment:
Q  161 tgtttggataaacaacttaggttgcagtttataacataagtgcttatcatg-taagctcttatt 223  Q
    ||||||||||||||| |||  |||||| |||||||||||||| |||||||| ||||| ||||||    
T  2987069 tgtttggataaacaagttaatttgcagcttataacataagtgtttatcatgataagcacttatt 2987132  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 11389407 - 11389456
Alignment:
Q  161 tgtttggataaacaacttaggttgcagtttataacataagtgcttatcatg 211  Q
    |||||||||||||||||||  |||||||||||| ||| |||||||||||||    
T  11389407 tgtttggataaacaacttat-ttgcagtttatatcatgagtgcttatcatg 11389456  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 39178430 - 39178369
Alignment:
Q  156 ggtcgtgtttggataaacaacttaggttgcagtttataacataagtgcttatcatgtaagct 217  Q
    |||| |||||||||||||||||||  || ||| |||||  ||||||||||||||| ||||||    
T  39178430 ggtcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatataagct 39178369  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 46886891 - 46886837
Alignment:
Q  156 ggtcgtgtttggataaacaacttaggttgcagtttataacataagtgcttatcatg 211  Q
    |||| |||||||||||||||||||  |||||| ||||| |||||||||||||||||    
T  46886891 ggtcctgtttggataaacaacttat-ttgcagcttatagcataagtgcttatcatg 46886837  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 2840239 - 2840289
Alignment:
Q  161 tgtttggataaacaacttaggttgcagtttataacataagtgcttatcatg 211  Q
    |||||| ||||||||||||  |||||| ||||| |||||||||||||||||    
T  2840239 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcatg 2840289  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 2844926 - 2844976
Alignment:
Q  161 tgtttggataaacaacttaggttgcagtttataacataagtgcttatcatg 211  Q
    |||||| ||||||||||||  |||||| ||||| |||||||||||||||||    
T  2844926 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcatg 2844976  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 29973083 - 29973117
Alignment:
Q  10 taagttgttttcataagctatccttaagagtttat 44  Q
    ||||||||||||||||||||||||| |||||||||    
T  29973083 taagttgttttcataagctatccttgagagtttat 29973117  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 46945775 - 46945829
Alignment:
Q  161 tgtttggataaacaacttaggttgcagtttataacataagtgcttatcatgtaag 215  Q
    |||||||||||||||||||| |||||| ||||| | |||| ||||||||| ||||    
T  46945775 tgtttggataaacaacttagtttgcagcttatagcttaagcgcttatcatataag 46945829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 48131229 - 48131290
Alignment:
Q  161 tgtttggataaacaacttaggttgcagtttataacataagtgcttatcatgtaagctcttat 222  Q
    |||||||||| ||||||||  |||||| ||| | |||||||||||||||| ||||| |||||    
T  48131229 tgtttggatacacaacttattttgcagcttacagcataagtgcttatcatataagcgcttat 48131290  T

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