View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0864_low_42 (Length: 251)

Name: NF0864_low_42
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0864_low_42
NF0864_low_42
[»] chr3 (11 HSPs)
chr3 (1-222)||(4180029-4180250)
chr3 (1-222)||(4176155-4176379)
chr3 (11-214)||(22009282-22009484)
chr3 (11-214)||(22185457-22185659)
chr3 (69-212)||(11423440-11423582)
chr3 (1-199)||(16252868-16253065)
chr3 (1-207)||(7633737-7633942)
chr3 (159-214)||(19199458-19199513)
chr3 (156-219)||(34437576-34437639)
chr3 (20-73)||(11425656-11425709)
chr3 (159-208)||(6778110-6778159)
[»] chr8 (3 HSPs)
chr8 (21-219)||(15909525-15909720)
chr8 (41-200)||(26148829-26148986)
chr8 (156-219)||(37227525-37227588)
[»] chr4 (5 HSPs)
chr4 (58-214)||(38653210-38653365)
chr4 (159-219)||(42704938-42704998)
chr4 (159-211)||(32305500-32305552)
chr4 (159-219)||(48577284-48577344)
chr4 (156-219)||(39465705-39465768)
[»] chr6 (2 HSPs)
chr6 (1-179)||(2029907-2030084)
chr6 (159-199)||(35018257-35018297)
[»] scaffold0251 (1 HSPs)
scaffold0251 (159-219)||(16777-16837)
[»] chr5 (6 HSPs)
chr5 (13-132)||(127367-127486)
chr5 (156-219)||(2743314-2743377)
chr5 (156-219)||(13274442-13274505)
chr5 (11-129)||(11799962-11800080)
chr5 (1-119)||(20943920-20944038)
chr5 (159-211)||(21101702-21101754)
[»] chr2 (5 HSPs)
chr2 (156-219)||(28036007-28036070)
chr2 (14-116)||(37938212-37938314)
chr2 (33-128)||(11805583-11805678)
chr2 (159-219)||(27334026-27334086)
chr2 (159-214)||(31116695-31116750)
[»] chr7 (3 HSPs)
chr7 (159-219)||(1326645-1326705)
chr7 (155-219)||(12627776-12627840)
chr7 (96-212)||(15820355-15820470)
[»] chr1 (5 HSPs)
chr1 (155-211)||(49000183-49000239)
chr1 (156-214)||(44490117-44490175)
chr1 (158-219)||(33297057-33297118)
chr1 (156-212)||(40553322-40553378)
chr1 (159-219)||(43782501-43782561)
[»] scaffold0010 (1 HSPs)
scaffold0010 (160-219)||(32040-32099)
[»] scaffold0007 (1 HSPs)
scaffold0007 (156-219)||(257063-257126)
[»] scaffold0018 (1 HSPs)
scaffold0018 (159-219)||(180127-180187)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4180029 - 4180250
Alignment:
Q  1 ccatgtccaaagccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4180029 ccatgtccaaagccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccat 4180128  T
Q  101 cttcttatgatcgcccctgctgccgttcctgaggaccacagttcccagacctttctatgaggaggttattgttgagcagcggtgggccggacatcctccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4180129 cttcttatgatcgcccctgctgccgttcctgaggaccacagttcctagacctccctatgaggaggttattgttgagcagcggtgggccggacatcctccc 4180228  T
Q  201 gacccataccagatgatcatcc 222  Q
    ||||||||||||||||||||||    
T  4180229 gacccataccagatgatcatcc 4180250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4176155 - 4176379
Alignment:
Q  1 ccatgtccaaagccagcaagaga---ggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcc 97  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4176155 ccatgtccaaagccagcaagagatcaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcc 4176254  T
Q  98 catcttcttatgatcgcccctgctgccgttcctgaggaccacagttcccagacctttctatgaggaggttattgttgagcagcggtgggccggacatcct 197  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||    
T  4176255 catcttcttatgatcgtccctgctaccgttcctgaggaccacagttcccagacctccctatgaggaggttattgttgagcagcggtgggccagacatcct 4176354  T
Q  198 cccgacccataccagatgatcatcc 222  Q
    ||||| |||||||||||||||||||    
T  4176355 cccgatccataccagatgatcatcc 4176379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 22009282 - 22009484
Alignment:
Q  11 agccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccatcttcttatga 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||   ||||| ||||||||||||||| |||| |||| |||| ||||||||| ||||||||    
T  22009282 agccagcaagagaggggtgagccggtcccggaggacgaggggtggaagcaatcaaaggggtacatggaatggttctcccgtatatcccatcctcttatga 22009381  T
Q  111 tcgcccctgctgccgttcctgaggaccacagttcccagacctttctatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccatacc 210  Q
    |||||| |||  ||||||||||| | |||| |||      ||  ||| |||||||||||||||||||||| ||||||| ||||||| | |||||||| ||    
T  22009382 tcgcccatgcgaccgttcctgagca-cacaattcttgtctctccctacgaggaggttattgttgagcagcagtgggccagacatccactcgacccattcc 22009480  T
Q  211 agat 214  Q
    ||||    
T  22009481 agat 22009484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 22185457 - 22185659
Alignment:
Q  11 agccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccatcttcttatga 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||   |||||  |||||||||||||| |||| |||| |||| ||||||||| ||||||||    
T  22185457 agccagcaagagaggggtgagccggtcccggaggacgaggggtggaagcaaccaaaggggtacatggaatggttctcccgtatatcccatcctcttatga 22185556  T
Q  111 tcgcccctgctgccgttcctgaggaccacagttcccagacctttctatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccatacc 210  Q
    |||||| |||  ||||||||||| | |||| |||      ||  ||| |||||||||||||||||||||| ||||||| ||||||| | |||||||| ||    
T  22185557 tcgcccatgcgaccgttcctgagca-cacaattcttgtctctccctacgaggaggttattgttgagcagcagtgggccagacatccactcgacccattcc 22185655  T
Q  211 agat 214  Q
    ||||    
T  22185656 agat 22185659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 11423582 - 11423440
Alignment:
Q  69 ggtacatgaaatgattctaccgtgtatcccatcttcttatgatcgcccctgctgccgttcctgaggaccacagttcccagacctttctatgaggaggtta 168  Q
    ||||||| ||||| ||||||||||||||||||| ||||||  ||  ||||||| ||||||||||| || | |||||||| |||| ||||| |||||||||    
T  11423582 ggtacattaaatggttctaccgtgtatcccatcctcttatcgtcagccctgctcccgttcctgagtac-atagttcccaaacctgtctatcaggaggtta 11423484  T
Q  169 ttgttgagcagcggtgggccggacatcctcccgacccataccag 212  Q
    |||||||||||  ||||||| ||||||||||||| |||| ||||    
T  11423483 ttgttgagcaggagtgggccagacatcctcccgatccattccag 11423440  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 16253065 - 16252868
Alignment:
Q  1 ccatgtccaaagccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccat 100  Q
    ||||||||  ||||||||  ||||||||||| |||||||| ||||||||| |    | ||| ||||||||||||||||||| |||||| ||||||  |||    
T  16253065 ccatgtccttagccagcagcagaggggtgagccggtcccgaaggacgaggagtggcaacatccaaaggggtacatgaaatgtttctacagtgtatttcat 16252966  T
Q  101 cttcttatgatcgcccctgctgccgttcctgaggaccacagttcccagacctttctatgaggaggttattgttgagcagcggtgggccggacatcctcc 199  Q
    | |||||||||||||| |||  || |||||||| | || ||||  |||||||  ||| |||||| ||||||||||||| | ||||||| ||||||||||    
T  16252965 cctcttatgatcgcccatgcgcccattcctgagta-catagtttgcagacctgcctacgaggagattattgttgagcaacagtgggccagacatcctcc 16252868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 7633737 - 7633942
Alignment:
Q  1 ccatgtccaaagccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccat 100  Q
    ||||||||  |||||||| |||||||||||  ||||||  ||||| |||| | | |||||||||  ||||||||| ||||||||||||  ||||||| ||    
T  7633737 ccatgtccttagccagcaggagaggggtgatccggtcctagaggaggaggtgtagaagcattcattggggtacatcaaatgattctacaatgtatcctat 7633836  T
Q  101 cttcttatgatcgcccctgctgccgttcctgaggaccacagttcccagacctttctatgaggaggttattgttgagcagcggtgggccggacatcctccc 200  Q
    | |||||||||||||| ||| ||| ||| |||  | ||||  ||     |||  ||||||||||||||||||||||||   ||||||| |||| ||||||    
T  7633837 cctcttatgatcgcccatgcagccattcatgacta-cacaactcatgtccctccctatgaggaggttattgttgagcaatagtgggccagacagcctccc 7633935  T
Q  201 gacccat 207  Q
    |||||||    
T  7633936 gacccat 7633942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 19199458 - 19199513
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagat 214  Q
    ||||||||| |||||||||||| ||||| | |||||||||||||||||||| ||||    
T  19199458 gaggaggttcttgttgagcagcagtgggtcagacatcctcccgacccatacaagat 19199513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 34437639 - 34437576
Alignment:
Q  156 tatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    ||||| |||||||||||| |||||| ||||||  |||||||||| |||||||||||||| ||||    
T  34437639 tatgatgaggttattgttaagcagcagtgggctagacatcctccagacccataccagatcatca 34437576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 11425709 - 11425656
Alignment:
Q  20 gagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtac 73  Q
    |||||||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  11425709 gagaggggtgagccggtcccggaggacgaggggtggaagcattcaaatgggtac 11425656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 6778110 - 6778159
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccata 208  Q
    |||||||||||||||||||||| || |||| |||| ||||| ||||||||    
T  6778110 gaggaggttattgttgagcagcagtaggccagacaccctcctgacccata 6778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 15909720 - 15909525
Alignment:
Q  21 agaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccatcttcttatgatcgcccctgc 120  Q
    ||||||||| | |||||||||||| ||||||||||| |||||||||||||||||||||||| |||||    ||||| |||| |||||  |||| ||||||    
T  15909720 agaggggtgggccggtcccggagggcgaggggcatatgcattcaaaggggtacatgaaatggttctataaagtatcacatcctcttaccatcggccctgc 15909621  T
Q  121 tgccgttcctgaggaccacagttcccagacctttctatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    | |||||| ||||   |||||||||||||||| |||| |||||||||||||||||| ||| |||||||  ||||||||||||| ||| |||||| ||||    
T  15909620 tcccgttcttgag---cacagttcccagacctgtctacgaggaggttattgttgagtagcagtgggccacacatcctcccgactcattccagatcatca 15909525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 26148829 - 26148986
Alignment:
Q  41 gaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccatcttcttatgatcgcccctgctgccgttcctgaggaccaca 140  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||| | ||||    
T  26148829 gaggacgaggagcataagaattcaaaggggtacatgaaatggttctaccgtgtatctcatcct-ttatgatcgcccctgctgccgttcctgagta-caca 26148926  T
Q  141 gttcccagacctttctatgaggaggttattgttgagcagcggtgggccggacatcctccc 200  Q
    ||||| |||||| |||| || || |||||||||||||||  ||||| |  ||||||||||    
T  26148927 gttcctagacctgtctacgaagatgttattgttgagcagtagtgggtcaaacatcctccc 26148986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 37227588 - 37227525
Alignment:
Q  156 tatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    |||||||||||| |||||||||||| ||||||| |||||||||| | |||||||||||| ||||    
T  37227588 tatgaggaggttgttgttgagcagcagtgggccagacatcctccagtcccataccagatcatca 37227525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 38653210 - 38653365
Alignment:
Q  58 gcattcaaaggggtacatgaaatgattctaccgtgtatcccatcttcttatgatcgcccctgctgccgttcctgaggaccacagttcccagacctttcta 157  Q
    ||||||||| |||| |||  |||| || |||||||||||||||| |||||| |||| ||||||| ||||||| ||| || ||||||||||||||| ||||    
T  38653210 gcattcaaatgggtgcattgaatggttttaccgtgtatcccatcgtcttatcatcggccctgctcccgttccagagtac-acagttcccagacctgtcta 38653308  T
Q  158 tgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagat 214  Q
      |||||||||||||||||||   ||||||| |||||||||||||||||| ||||||    
T  38653309 ccaggaggttattgttgagcaagagtgggccagacatcctcccgacccattccagat 38653365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 42704998 - 42704938
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  42704998 gaggaggttcttgttgagcagcagtgggccagacatcctcccgacccataccagatcatca 42704938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 32305552 - 32305500
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccatacca 211  Q
    |||||||||||||||||||||  ||||||| |||||||||| |||||||||||    
T  32305552 gaggaggttattgttgagcagttgtgggccagacatcctccagacccatacca 32305500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 48577344 - 48577284
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    |||||||||||||||||||||| || |||| |||||||||| ||| |||||||||| ||||    
T  48577344 gaggaggttattgttgagcagcagtaggccagacatcctccagactcataccagatcatca 48577284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 39465705 - 39465768
Alignment:
Q  156 tatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    |||||||||||||||||| || ||| ||||| | |||||||||| |||||||||||||| ||||    
T  39465705 tatgaggaggttattgttaagtagcagtgggtcagacatcctccagacccataccagatcatca 39465768  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 2029907 - 2030084
Alignment:
Q  1 ccatgtccaaagccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccat 100  Q
    ||||||||  |||||||| || ||||||||  ||||||| ||||||||| ||   ||||||||  | |||||||| ||||| ||||||||||||||||||    
T  2029907 ccatgtccttagccagcaggataggggtgacccggtcccagaggacgagtggtggaagcattcggatgggtacattaaatggttctaccgtgtatcccat 2030006  T
Q  101 cttcttatgatcgcccctgctgccgttcctgaggaccacagttcccagacctttctatgaggaggttattgttgagcag 179  Q
    | ||||||  ||  ||||||| ||||||||||| | || || |||||||||| ||||  | ||||||||||||||||||    
T  2030007 cctcttatcgtcaaccctgctcccgttcctgagta-catagctcccagacctgtctaccaagaggttattgttgagcag 2030084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 35018257 - 35018297
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcc 199  Q
    |||||||||||||||||||||  ||||||| ||||||||||    
T  35018257 gaggaggttattgttgagcagtagtgggccagacatcctcc 35018297  T

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Target: scaffold0251 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 16837 - 16777
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  16837 gaggaggttcttgttgagcagcagtgggccagacatcctcccgacccataccagatcatca 16777  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 127486 - 127367
Alignment:
Q  13 ccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccatcttcttatgatc 112  Q
    |||||| |||||||||||  |||||||||| ||||||| | | ||||||||||| |||||||||||||| ||||||   |||| ||| | | | ||||||    
T  127486 ccagcaggagaggggtgatccggtcccggaagacgaggtgtagaagcattcaaaagggtacatgaaatggttctacaaagtattccagcctataatgatc 127387  T
Q  113 gcccctgctgccgttcctga 132  Q
    |||||||| ||| |||||||    
T  127386 gcccctgcagccattcctga 127367  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 2743314 - 2743377
Alignment:
Q  156 tatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    |||||||||| |||||||||||||| ||||||| |||||||||  |||||||||||||| ||||    
T  2743314 tatgaggaggatattgttgagcagcagtgggccagacatcctctagacccataccagatcatca 2743377  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 13274442 - 13274505
Alignment:
Q  156 tatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    ||||||||||||||||||||||||| ||||||| |||||||||  |||||||| ||||| ||||    
T  13274442 tatgaggaggttattgttgagcagcagtgggccagacatcctcaagacccataacagatcatca 13274505  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 11799962 - 11800080
Alignment:
Q  11 agccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccatcttcttatga 110  Q
    |||||||| || ||||||||  ||||||| ||||||||||     ||||||||   ||||||||| |||||  |||||||||||||||||| | ||| ||    
T  11799962 agccagcaggaaaggggtgatccggtcccagaggacgaggtctggaagcattcggtggggtacatcaaatggatctaccgtgtatcccatccttttaaga 11800061  T
Q  111 tcgcccctgctgccgttcc 129  Q
    |||||| ||| ||||||||    
T  11800062 tcgcccatgcggccgttcc 11800080  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 20943920 - 20944038
Alignment:
Q  1 ccatgtccaaagccagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccat 100  Q
    ||||||||  |||||||| |||||||||||  |||||||||| ||||||| |   ||||||     ||||||||||| ||| |||||||||||||| |||    
T  20943920 ccatgtccttagccagcaggagaggggtgatccggtcccggaagacgaggtgtggaagcatgaggtggggtacatgagatggttctaccgtgtatctcat 20944019  T
Q  101 cttcttatgatcgcccctg 119  Q
    | | ||||||||| |||||    
T  20944020 cctattatgatcgtccctg 20944038  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 21101702 - 21101754
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccatacca 211  Q
    ||||||||| |||||||||||  ||||||| |||||||| |||| ||||||||    
T  21101702 gaggaggttcttgttgagcagtagtgggccagacatccttccgaaccatacca 21101754  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 28036007 - 28036070
Alignment:
Q  156 tatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||| ||||    
T  28036007 tatgaggaggttattgttgagcagcagtgggccagacatactccagacccataccagatcatca 28036070  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 37938314 - 37938212
Alignment:
Q  14 cagcaagagaggggtgagtcggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccatcttcttatgatcg 113  Q
    |||||||||||||||||  |||||||||||||||||| |   ||||||   |    ||||||||||||  ||||||||||||||||||||||||||||||    
T  37938314 cagcaagagaggggtgatccggtcccggaggacgaggtgtggaagcatgagattcagtacatgaaatggatctaccgtgtatcccatcttcttatgatcg 37938215  T
Q  114 ccc 116  Q
    |||    
T  37938214 ccc 37938212  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 11805678 - 11805583
Alignment:
Q  33 cggtcccggaggacgaggggcataagcattcaaaggggtacatgaaatgattctaccgtgtatcccatcttcttatgatcgcccctgctgccgttc 128  Q
    |||||||||||||| ||| |   |||||||||||||||||||| | ||| ||||||   |||||||||| | |||||||||||||| | |||||||    
T  11805678 cggtcccggaggacaaggtgtggaagcattcaaaggggtacataagatggttctacaaagtatcccatcctattatgatcgcccctacggccgttc 11805583  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 27334026 - 27334086
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    |||||||||||| || |||| | ||||||| |||||||||||||||||||| |||| ||||    
T  27334026 gaggaggttattattaagcaacagtgggccagacatcctcccgacccatacaagatcatca 27334086  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 31116750 - 31116695
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagat 214  Q
    ||||||||| |||||||| | | |||||||  ||||||||||||||||||||||||    
T  31116750 gaggaggttcttgttgagaaacagtgggccaaacatcctcccgacccataccagat 31116695  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 1326705 - 1326645
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||||||| ||||| ||||    
T  1326705 gaggaggttcttgttgagcagcagtgggccagacatcctcccgacccatatcagatcatca 1326645  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 12627776 - 12627840
Alignment:
Q  155 ctatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    |||||||||||||||||||||||| | ||||| |  |||||||||||||||||||||||| ||||    
T  12627776 ctatgaggaggttattgttgagcaacagtgggtcaaacatcctcccgacccataccagatcatca 12627840  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 15820470 - 15820355
Alignment:
Q  96 cccatcttcttatgatcgcccctgctgccgttcctgaggaccacagttcccagacctttctatgaggaggttattgttgagcagcggtgggccggacatc 195  Q
    |||||| |||||| |||| ||||||| |||||| |||| ||  ||||||||||| || || | |||||||| || |||||||||| |||||   ||||||    
T  15820470 cccatcctcttatcatcggccctgctcccgttcttgagtacg-cagttcccagatctatcaacgaggaggtcatcgttgagcagcagtgggttagacatc 15820372  T
Q  196 ctcccgacccataccag 212  Q
    |||||||||||| ||||    
T  15820371 ctcccgacccattccag 15820355  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 49000183 - 49000239
Alignment:
Q  155 ctatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccatacca 211  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||    
T  49000183 ctatgaggaggctattgttgagcagcagtgggccagacatcctccagacccatacca 49000239  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 44490117 - 44490175
Alignment:
Q  156 tatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagat 214  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||| | ||||||||||||    
T  44490117 tatgaggagattattgttgagcagcagtgggccagacatcctccaggcccataccagat 44490175  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 33297118 - 33297057
Alignment:
Q  158 tgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    ||||||||||||||||||||||| |||||||  ||||||||  |||||||||||||| ||||    
T  33297118 tgaggaggttattgttgagcagcagtgggccaaacatcctctagacccataccagatcatca 33297057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 40553378 - 40553322
Alignment:
Q  156 tatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccag 212  Q
    ||||||||||||||||||||||||| ||||| | |||||||||| || |||||||||    
T  40553378 tatgaggaggttattgttgagcagcagtgggtcagacatcctccagatccataccag 40553322  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 43782561 - 43782501
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    |||||||||||||||||||||| |||| || ||||||||||| ||| ||||||||| ||||    
T  43782561 gaggaggttattgttgagcagcagtggaccagacatcctcccaacctataccagatcatca 43782501  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 32099 - 32040
Alignment:
Q  160 aggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    ||||||||||||||||||||| |||||||  ||||||| |||| ||||||||||| ||||    
T  32099 aggaggttattgttgagcagcagtgggccatacatcctaccgatccataccagatcatca 32040  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 257126 - 257063
Alignment:
Q  156 tatgaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    ||||||||||||||||||||||||| ||||||  || ||||||| |||||||||| ||| ||||    
T  257126 tatgaggaggttattgttgagcagcagtgggcaagatatcctccagacccatacctgatcatca 257063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 180187 - 180127
Alignment:
Q  159 gaggaggttattgttgagcagcggtgggccggacatcctcccgacccataccagatgatca 219  Q
    |||| |||||||||||||||   ||||| | ||||||||||||||||||||||||| ||||    
T  180187 gaggtggttattgttgagcaatagtgggtcagacatcctcccgacccataccagatcatca 180127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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