View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_low_43 (Length: 250)
Name: NF0864_low_43
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_43 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 41223533 - 41223416
Alignment:
| Q |
73 |
tcatatttcttcatcttcatatttgatgcttcttctagtttctgaaccaagatttttattgttacttcttgttatttctgaacccaaatttcttcttctt |
172 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
41223533 |
tcatatttcttcatcttcatatttgatgcttcttctaatttttgaaccaagatttctattgttatttcttgttatttatgaacccaaatttcttcttctt |
41223434 |
T |
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| Q |
173 |
ttccctaattaattgtga |
190 |
Q |
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| T |
41223433 |
tttccaaattaattgtga |
41223416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 32573243 - 32573360
Alignment:
| Q |
73 |
tcatatttcttcatcttcatatttgatgcttcttctagtttctgaaccaagatttttattgttacttcttgttatttctgaacccaaatttcttcttctt |
172 |
Q |
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||||||||||||||||||||||||||||||||| ||| | | ||||||||||||| |||||||| |||||||||||| |||||||| ||||||||||||| |
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| T |
32573243 |
tcatatttcttcatcttcatatttgatgcttctactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttcttctt |
32573342 |
T |
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| Q |
173 |
ttccctaattaattgtga |
190 |
Q |
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| T |
32573343 |
tttccaaattaattgtga |
32573360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 57174 - 57291
Alignment:
| Q |
73 |
tcatatttcttcatcttcatatttgatgcttcttctagtttctgaaccaagatttttattgttacttcttgttatttctgaacccaaatttcttcttctt |
172 |
Q |
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||||||||||||||||||||||||||||||||| ||| | | ||||||||||||| |||||||| |||||||||||| |||||||| |||||||| |||| |
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| T |
57174 |
tcatatttcttcatcttcatatttgatgcttctactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttcatctt |
57273 |
T |
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| Q |
173 |
ttccctaattaattgtga |
190 |
Q |
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| T |
57274 |
tttccaaattaattgtga |
57291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 34924612 - 34924495
Alignment:
| Q |
73 |
tcatatttcttcatcttcatatttgatgcttcttctagtttctgaaccaagatttttattgttacttcttgttatttctgaacccaaatttcttcttctt |
172 |
Q |
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||||||||||||||||||||||||||||||||| ||| | | ||||||||||||| |||||||| |||||||||||| |||||||| |||||||| |||| |
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| T |
34924612 |
tcatatttcttcatcttcatatttgatgcttctactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttcatctt |
34924513 |
T |
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| Q |
173 |
ttccctaattaattgtga |
190 |
Q |
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|| || |||||||||||| |
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| T |
34924512 |
tttccaaattaattgtga |
34924495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 14112207 - 14112111
Alignment:
| Q |
73 |
tcatatttcttcatcttcatatttgatgcttcttctagtttctgaaccaagatttttattgttacttcttgttatttctgaacccaaatttcttctt |
169 |
Q |
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|||||||||||||||||||||||||||||||| ||| | | ||||||||||||| |||||||| |||||||||||| |||||||| |||||||||| |
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| T |
14112207 |
tcatatttcttcatcttcatatttgatgcttcaactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttctt |
14112111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 42025242 - 42025181
Alignment:
| Q |
22 |
catcatcactgttcatcctgccacttcttttttgcaactctccaaagtaaatcatatttctt |
83 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025242 |
catcttcactgttcatcctgccacttcttttttgcaactctccaaagtaaatcatatttctt |
42025181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 19847979 - 19848094
Alignment:
| Q |
75 |
atatttcttcatcttcatatttgatgcttcttctagtttctgaaccaagatttttattgttacttcttgttatttctgaacccaaatttcttcttctttt |
174 |
Q |
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||||||||||||||||||||||||| ||||| ||| | | ||||||||||||| |||||||| |||||||||||| |||||||| ||||||||||||||| |
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| T |
19847979 |
atatttcttcatcttcatatttgatacttctactaatatttgaaccaagatttctattgttatttcttgttatttatgaacccatatttcttcttctttt |
19848078 |
T |
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| Q |
175 |
ccctaattaattgtga |
190 |
Q |
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| T |
19848079 |
tccaaattaattgtga |
19848094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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