View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_low_5 (Length: 431)
Name: NF0864_low_5
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 33936092 - 33935695
Alignment:
| Q |
13 |
aatattaaaagttttcaaagagatgaggtgtttgag-gaagagtgagaaaattttgttctaagaaaaatgatgtgttatttatgacttgacttatataac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33936092 |
aatattaaaagttttcaaagagatgaggtgtttgagagaagagtgagaaaattttgttctaagaaaaatgatgtgttatttatgacttgacttatataac |
33935993 |
T |
|
| Q |
112 |
ttttgaaaatagatcaaggagtaaacttaaaaaagaatgttgcaaaatatgagtgaaattgattcacatattcttataaacatggaat----gagttgat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33935992 |
ttttgaaaatagatcaaggagtaaacttaaaaaagaatgttgcaaaatatgagtgaaattgattcacatattcttataaacatggaatgagtgagttgat |
33935893 |
T |
|
| Q |
208 |
ctgatagttggataattg---gtaactagtaactcattataagtcaaagctgattgatctcatgattggataactagtaactgggcatgtttgagatctt |
304 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
33935892 |
ctgatagttggataattggtagtaactagtaactcattataagtcaaagctgattgatctcatgattggataactagtaactcggcatg-ttgagatctt |
33935794 |
T |
|
| Q |
305 |
cttattcacttctcgagtgacaaattcatcataagtcaatgttgactgatctattaaattttcatgta-nnnnnnncaatttcattttgtaatcgattt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
33935793 |
cttattcacttctcgagtgacaaattcatcataagtcaatgttgactgatctattaacttttcatgtattttttttcaatttcattttgtaatcgattt |
33935695 |
T |
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