View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0864_low_50 (Length: 219)
Name: NF0864_low_50
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0864_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 4119608 - 4119724
Alignment:
| Q |
1 |
gcttgagcttcatagttaatacatgttcataatagccataaacaagataaaaccatcacggtagcttgctcaaagtcacaaaataataacctaccaagga |
100 |
Q |
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| T |
4119608 |
gcttgagcttcatagttaatacatgttcataatagccataaacaagataaaaccatcacggtagcttgctcaaagtcacaaaataataacctaccaagga |
4119707 |
T |
|
| Q |
101 |
taaaatcatcacttcat |
117 |
Q |
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||||||||||||||||| |
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| T |
4119708 |
taaaatcatcacttcat |
4119724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 4119739 - 4119772
Alignment:
| Q |
160 |
aaaaatatcttccattttgtatcaccagaataat |
193 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4119739 |
aaaaatatcttccattttgtatcaccagaataat |
4119772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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