View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0864_low_6 (Length: 403)

Name: NF0864_low_6
Description: NF0864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0864_low_6
NF0864_low_6
[»] chr8 (16 HSPs)
chr8 (163-394)||(2436704-2436922)
chr8 (1-223)||(2004671-2004893)
chr8 (38-226)||(2011663-2011851)
chr8 (38-226)||(1963179-1963367)
chr8 (1-222)||(1968742-1968963)
chr8 (2-384)||(1964807-1965170)
chr8 (69-226)||(2018445-2018602)
chr8 (38-226)||(2015062-2015250)
chr8 (28-212)||(2008062-2008246)
chr8 (21-133)||(2433051-2433163)
chr8 (303-390)||(2014923-2015010)
chr8 (303-390)||(1963419-1963506)
chr8 (303-390)||(2018306-2018393)
chr8 (290-383)||(2007910-2008003)
chr8 (249-356)||(2004557-2004658)
chr8 (249-353)||(2011555-2011653)
[»] chr1 (4 HSPs)
chr1 (89-226)||(5902403-5902540)
chr1 (89-226)||(5905887-5906024)
chr1 (290-384)||(5902582-5902676)
chr1 (290-384)||(5906066-5906160)
[»] scaffold0078 (1 HSPs)
scaffold0078 (130-170)||(2806-2846)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 163 - 394
Target Start/End: Original strand, 2436704 - 2436922
Alignment:
Q  163 tttcacaagaacaaattgttcagctggctttcggtctggaatcgagtaatcagaaattcttatgatgatgtccatctcattgaagtagcaccaaatagta 262  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  | |||           ||| ||||||||||||||    
T  2436704 tttcacaagaacaaattgttgagctggctttcggtctggaatcgagtaatcagaaattcttatgg-gttgt-----------aag-agcaccaaatagta 2436790  T
Q  263 gttcatctagtgcagcatacttttcagtttcagcacaaaatgatggtgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2436791 gttcatctagtgcagcatacttttcagtttcagcacaaaatgatgttgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagg 2436890  T
Q  363 gatggttattccatcatgggcagcacaggttc 394  Q
    |||||||||||||||||||||| |||||||||    
T  2436891 gatggttattccatcatgggcaccacaggttc 2436922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2004893 - 2004671
Alignment:
Q  1 aagaggaaggaagtaacatccctcttttgtatccggctggacccatcatccagacagtaacaagttccggtgatgatgctaataggtcggagtgtctcac 100  Q
    |||| ||||||||| | | ||||| | ||||||| | |||||||||||||| |||  ||  |||||||||||||| |  | || ||| ||| ||||| ||    
T  2004893 aagatgaaggaagtgaaaaccctcctgtgtatcctgttggacccatcatcccgacgatagaaagttccggtgatgctaatcatgggttggaatgtctaac 2004794  T
Q  101 atggttggataaacaacatccttgttcaattttgtatgtttcttttgggagtggcggtacactttcacaagaacaaattgttcagctggctttcggtctg 200  Q
    ||||||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||    
T  2004793 atggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgttgagctggctttgggtttg 2004694  T
Q  201 gaatcgagtaatcagaaattctt 223  Q
    |||| ||||||| ||| ||||||    
T  2004693 gaattgagtaataagatattctt 2004671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 2011851 - 2011663
Alignment:
Q  38 tggacccatcatccagacagtaacaagttccggtgatgatgctaataggtcggagtgtctcacatggttggataaacaacatccttgttcaattttgtat 137  Q
    ||||||||||||||||||||||||| |||| | ||||||||||||| | | |||||||||  ||||||| || ||||||||  |||||||| ||||||||    
T  2011851 tggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtat 2011752  T
Q  138 gtttcttttgggagtggcggtacactttcacaagaacaaattgttcagctggctttcggtctggaatcgagtaatcagaaattcttatg 226  Q
    || ||||| || ||||| |||||||||||||| |||||||||||| |||||||||| ||| |||||| |||||||||||||||| ||||    
T  2011751 gtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatg 2011663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 38 - 226
Target Start/End: Original strand, 1963179 - 1963367
Alignment:
Q  38 tggacccatcatccagacagtaacaagttccggtgatgatgctaataggtcggagtgtctcacatggttggataaacaacatccttgttcaattttgtat 137  Q
    ||||||||| ||||| ||| ||||||  || |||||||||||||||| ||  |||||||| ||||||||||| ||||||  |||||||||| ||||||||    
T  1963179 tggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgacatggttggacaaacaatgtccttgttcagttttgtat 1963278  T
Q  138 gtttcttttgggagtggcggtacactttcacaagaacaaattgttcagctggctttcggtctggaatcgagtaatcagaaattcttatg 226  Q
    ||||||||||| ||||| || |||||||| ||||||||||||| | || ||||||| ||| |||||| ||||||||| |||||||||||    
T  1963279 gtttcttttggtagtggtggcacactttcgcaagaacaaattgatgagttggctttgggtttggaattgagtaatcataaattcttatg 1963367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1968742 - 1968963
Alignment:
Q  1 aagaggaaggaagtaacatccctcttttgtatccggctggacccatcatccagacagtaacaagttccggtgatgatgctaataggtcggagtgtctcac 100  Q
    ||||||| |||||| ||| |||||   ||||||| | |||||| || ||||| |||| ||||||||| ||||||||||||||| | | |||||||||  |    
T  1968742 aagaggagggaagtgacaaccctccagtgtatcctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggc 1968841  T
Q  101 atggttggataaacaacatccttgttcaattttgtatgtttcttttgggagtggcggtacactttcacaagaacaaattgttcagctggctttcggtctg 200  Q
     |||||||||||||| || ||||| ||| |||||||||| ||||| |||||||| |||||||||||||| |||||||||||  |||||||||| ||| ||    
T  1968842 ctggttggataaacagcagccttgctcagttttgtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttg 1968941  T
Q  201 gaatcgagtaatcagaaattct 222  Q
    |||| ||||||| | |||||||    
T  1968942 gaattgagtaataaaaaattct 1968963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 2 - 384
Target Start/End: Original strand, 1964807 - 1965170
Alignment:
Q  2 agaggaaggaagtaacatccctcttttgtatccggctggacccatcatccagacagtaacaagttccggtgatgatgctaataggtcggagtgtctcaca 101  Q
    |||||||||||||  || ||||  | ||||||| | ||||||||||||| | ||||||||| |||| |    |||||||||| | | |||||||||  ||    
T  1964807 agaggaaggaagtggcaacccttctgtgtatcctgttggacccatcatcgatacagtaacatgttctgaccgtgatgctaatggtttggagtgtctgtca 1964906  T
Q  102 tggttggataaacaacatccttgttcaattttgtatgtttcttttgggagtggcggtacactttcacaagaacaaattgttcagctggctttcggtctgg 201  Q
    ||||| || ||||||||  |||||||| |||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||| | ||  | |    
T  1964907 tggttagacaaacaacaatcttgttcagttttgtatgtgtctttcgggagtggtggtacactttcacacgaacaaattgttcagctggctctggggttag 1965006  T
Q  202 aatcgagtaatcagaaattcttatgatgatgtccatctcattgaagtagcaccaaatagtagttcatctagtgcagcatacttttcagtttcagcacaaa 301  Q
    ||| |||||||||||||||| ||||  | |||         |||    ||||||| ||||||||||||||||||||||||    ||  ||||||||||||    
T  1965007 aattgagtaatcagaaattcctatgg-gttgtg--------tga----gcaccaagtagtagttcatctagtgcagcata----tc--tttcagcacaaa 1965087  T
Q  302 atgatggtgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattccatcatgggca 384  Q
    |||| |||||||||||| |||||||||||| ||||||  | |||||||| |||||  ||||  | || ||| |||||||||||    
T  1965088 atgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggca 1965170  T

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Target: chr8; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 2018602 - 2018445
Alignment:
Q  69 ggtgatgatgctaataggtcggagtgtctcacatggttggataaacaacatccttgttcaattttgtatgtttcttttgggagtggcggtacactttcac 168  Q
    |||||||||| |||| ||| | |||||||  |||||||||| ||||| ||  |||||||| ||||||||||||||||||||||||| || |||||||| |    
T  2018602 ggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgc 2018503  T
Q  169 aagaacaaattgttcagctggctttcggtctggaatcgagtaatcagaaattcttatg 226  Q
    |||||||||||  | |||||||||| ||| |||||| ||||||||| |||||||||||    
T  2018502 aagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatg 2018445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 2015250 - 2015062
Alignment:
Q  38 tggacccatcatccagacagtaacaagttccggtgatgatgctaataggtcggagtgtctcacatggttggataaacaacatccttgttcaattttgtat 137  Q
    ||||||||| ||||| ||| ||||||  || |||||||||||||||| ||  || |||||  |||||||||| |||||||  ||||||||| || |||||    
T  2015250 tggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctggcatggttggacaaacaacggccttgttcagttctgtat 2015151  T
Q  138 gtttcttttgggagtggcggtacactttcacaagaacaaattgttcagctggctttcggtctggaatcgagtaatcagaaattcttatg 226  Q
    || ||||| |||||||| || |||||||| ||||||||||||  | |||||||||| ||| |||||| ||||||||| |||||||||||    
T  2015150 gtgtctttcgggagtggtggaacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatg 2015062  T

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Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 2008246 - 2008062
Alignment:
Q  28 tgtatccggctggacccatcatccagacagtaacaagttccggtgatgatgctaataggtcggagtgtctcacatggttggataaacaacatccttgttc 127  Q
    ||||||| | |||||| || ||| | |||| |||||  || ||||||||||||||| | | |||||||||  | |||||||||||||| || ||||||||    
T  2008246 tgtatcctgttggacctattatcgaaacagaaacaaaatctggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcaaccttgttc 2008147  T
Q  128 aattttgtatgtttcttttgggagtggcggtacactttcacaagaacaaattgttcagctggctttcggtctggaatcgagtaat 212  Q
      |||||||||| |||||||||||||| |||||||||||||| || ||||||||  |||| ||||| ||| |||||| |||||||    
T  2008146 ggttttgtatgtatcttttgggagtggaggtacactttcacaggagcaaattgtggagctagctttgggtttggaattgagtaat 2008062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 2433051 - 2433163
Alignment:
Q  21 cctcttttgtatccggctggacccatcatccagacagtaacaagttccggtgatgatgctaataggtcggagtgtctcacatggttggataaacaacatc 120  Q
    |||||| ||||||| | ||||||||||||||||||| |||||||||| |  ||||||||||||| || |||||||||  ||||||||||| | ||||| |    
T  2433051 cctcttgtgtatcctgttggacccatcatccagacaataacaagttctgacgatgatgctaatatgttggagtgtctgtcatggttggatgaccaacaac 2433150  T
Q  121 cttgttcaatttt 133  Q
    |||| ||| ||||    
T  2433151 cttgctcagtttt 2433163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 2015010 - 2014923
Alignment:
Q  303 tgatggtgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattccatcatgggcagcacag 390  Q
    ||||| ||||||||| ||||||||||| |  |||||| | |||||||| ||||| ||||||||||||||||||||||||||| |||||    
T  2015010 tgatgttgaccctttacaatttttaccttcagggttcttggagagaacaaaggaacaagggatggttattccatcatgggcaccacag 2014923  T

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Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 1963419 - 1963506
Alignment:
Q  303 tgatggtgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattccatcatgggcagcacag 390  Q
    ||||| ||| ||||| || |||||||||| ||||||  | |||||||||||||| |||||||||||| |||||||||||||| |||||    
T  1963419 tgatgttgatcctttacagtttttaccatctgggtttttggagagaaccaaggaacaagggatggttgttccatcatgggcaccacag 1963506  T

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Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 2018393 - 2018306
Alignment:
Q  303 tgatggtgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattccatcatgggcagcacag 390  Q
    ||||| ||||||||| ||||||||||| |  |||||| | |||||||  ||||| ||||||||||||||||||||||||||| |||||    
T  2018393 tgatgttgaccctttacaatttttaccttcagggttcttggagagaaaaaaggaacaagggatggttattccatcatgggcaccacag 2018306  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 383
Target Start/End: Complemental strand, 2008003 - 2007910
Alignment:
Q  290 tttcagcacaaaatgatggtgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattccatcatgggc 383  Q
    |||||||| ||||||||  |||| ||||||| |||||||||| ||||||| | ||||||||||||||  ||||  | |||||| ||||||||||    
T  2008003 tttcagcagaaaatgatattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggc 2007910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 356
Target Start/End: Complemental strand, 2004658 - 2004557
Alignment:
Q  249 agcaccaaatagtagttcatctagtgcagcatacttttcagtttcagcacaaaatgatggtgaccctttgcaatttttaccatgtgggttcatagagaga 348  Q
    |||||||| |||||||||||||||||||| ||| |||||||      |||||||||||| |||| ||| ||| ||||| ||||  |||||| | ||||||    
T  2004658 agcaccaagtagtagttcatctagtgcaggatatttttcag------cacaaaatgatgctgacacttggcagtttttgccatccgggttcttggagaga 2004565  T
Q  349 accaagga 356  Q
    ||||||||    
T  2004564 accaagga 2004557  T

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Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 353
Target Start/End: Complemental strand, 2011653 - 2011555
Alignment:
Q  249 agcaccaaatagtagttcatctagtgcagcatacttttcagtttcagcacaaaatgatggtgaccctttgcaatttttaccatgtgggttcatagagaga 348  Q
    |||||||| |||||||||||||| |||||||||    ||  |||||||||||||||||| |||  |||| ||||||||||||| ||||||  | ||||||    
T  2011653 agcaccaagtagtagttcatctaatgcagcata----tc--tttcagcacaaaatgatgttgatgctttacaatttttaccatctgggtttttggagaga 2011560  T

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Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 5902403 - 5902540
Alignment:
Q  89 ggagtgtctcacatggttggataaacaacatccttgttcaattttgtatgtttcttttgggagtggcggtacactttcacaagaacaaattgttcagctg 188  Q
    ||||||||| ||||||||  |||||||||| ||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||| | || ||    
T  5902403 ggagtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcactttcacaagaacaaattgatgagttg 5902502  T
Q  189 gctttcggtctggaatcgagtaatcagaaattcttatg 226  Q
    ||| | ||| |||||| ||||||||| |||||||||||    
T  5902503 gctattggtttggaattgagtaatcataaattcttatg 5902540  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 226
Target Start/End: Original strand, 5905887 - 5906024
Alignment:
Q  89 ggagtgtctcacatggttggataaacaacatccttgttcaattttgtatgtttcttttgggagtggcggtacactttcacaagaacaaattgttcagctg 188  Q
    ||||||| | |||||||| |||||||| || ||||||||| ||||||||||||||||||| || || ||| |||||||||||||||||| || | ||||     
T  5905887 ggagtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaactgatgagcta 5905986  T
Q  189 gctttcggtctggaatcgagtaatcagaaattcttatg 226  Q
    ||| | ||| |||||| ||||||||| |||||||||||    
T  5905987 gctattggtttggaattgagtaatcataaattcttatg 5906024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 5902582 - 5902676
Alignment:
Q  290 tttcagcacaaaatgatggtgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattccatcatgggca 384  Q
    |||||||| ||||||||| ||| | |||||| |||||||||  ||||||| | |||||||||||||| |||||||||||||||||||||||||||    
T  5902582 tttcagcagaaaatgatgttgatcttttgcagtttttaccacctgggttcttggagagaaccaaggagcaagggatggttattccatcatgggca 5902676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 5906066 - 5906160
Alignment:
Q  290 tttcagcacaaaatgatggtgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattccatcatgggca 384  Q
    ||||||||||||| |||| ||| | || |||  ||||||||| ||||||| | |||||||||||||| ||||| |||||||||||||||||||||    
T  5906066 tttcagcacaaaacgatgttgatctttcgcaggttttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggca 5906160  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 2806 - 2846
Alignment:
Q  130 ttttgtatgtttcttttgggagtggcggtacactttcacaa 170  Q
    ||||||||||||||||||| ||||| || ||||||||||||    
T  2806 ttttgtatgtttcttttggaagtggtggaacactttcacaa 2846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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