View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_high_10 (Length: 357)
Name: NF0865_high_10
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 38052452 - 38052700
Alignment:
| Q |
1 |
acatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtgttggctgcaatcatcaaacacttgtctcctgatgttgat |
100 |
Q |
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| T |
38052452 |
acatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtgttggctgcaatcatcaaacacttgtctcctgatgttgat |
38052551 |
T |
|
| Q |
101 |
aaagtgagaaggttagtgactcaatcaaagactttgcaacataagatgacagctaaagatagtgcaacttggtccaaagtaatgaaccaagaacaagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38052552 |
aaagtgagaaggttagtgactcaatcaaagactttgcaacataagatgacagctaaagatagtgcaacttggtccaaagtaatgaaccaagaacaagctt |
38052651 |
T |
|
| Q |
201 |
tgcttcatcttactgaaaagtgcctcaagatatcagaagaaggtgaaag |
249 |
Q |
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| T |
38052652 |
tgcttcatcttactgaaaagtgcctcaagatatcagaagaaggtgaaag |
38052700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 41239896 - 41240119
Alignment:
| Q |
15 |
cttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtgttggctgcaatcatcaaacacttgtctcctgatgttgataaagtgagaaggtt |
114 |
Q |
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| T |
41239896 |
cttataaaagaccttatgatttgaaaaaggcttggaaagtttctgtgttggctgcaatcatcaaacacttttctcctgatgtgaataaagtgagaaagtt |
41239995 |
T |
|
| Q |
115 |
agtgactcaatcaaagactttgcaacataagatgacagctaaagatagtgcaacttggtccaaagtaatgaaccaagaacaagctttgcttcatcttact |
214 |
Q |
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| T |
41239996 |
agtgactcaatccaagactttgcaagataagatgacagataaagata-tgcaaattggtccaaagttatgaaccaagaacatgcattgcttcaactcact |
41240094 |
T |
|
| Q |
215 |
gaaaagtgcctcaagatatcagaag |
239 |
Q |
| |
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| T |
41240095 |
aacaagtacttcaggatatcagaag |
41240119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 25685452 - 25685535
Alignment:
| Q |
266 |
attggacaaatcttatctcatctatttttattgggaacccaaggcatctatggatatattttattccctcaattcatattcttc |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25685452 |
attggacaaatcttatctcatctatttttattgggaacccaaggcatctatggatatattttattccctcaattcatattcttc |
25685535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 39679910 - 39680110
Alignment:
| Q |
5 |
ggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtgttggctgcaatcatcaaacacttgtctcctgatgttgataaag |
104 |
Q |
| |
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||||||||||||||||| ||||| ||||| | |||||||| |||||||||||||| ||||||| | || ||||| |||| |||||| | || ||| |
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| T |
39679910 |
ggcccaccaccttataagaaaccacatgaccttaaaaaggcatggaaagtttctgttttggctggtgttataaaacatatgtcacctgatttggagaaat |
39680009 |
T |
|
| Q |
105 |
tgagaaggttagtgactcaatcaaagactttgcaacataagatgacagctaaagatagtgcaacttggtccaaagtaatgaaccaagaacaagctttgct |
204 |
Q |
| |
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| || | ||| || ||||| ||||| ||||||||| |||||||||| || | ||||||||| |||||||| ||||| ||||| |||||| |||||||||| |
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| T |
39680010 |
taaggaagttggttactcagtcaaaaactttgcaagataagatgaccgcaagagatagtgctacttggtctaaagttatgaatcaagaagaagctttgct |
39680109 |
T |
|
| Q |
205 |
t |
205 |
Q |
| |
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| |
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|
| T |
39680110 |
t |
39680110 |
T |
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