View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_high_2 (Length: 488)
Name: NF0865_high_2
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 33079790 - 33079453
Alignment:
| Q |
11 |
cacagataccgatgcaaataactacatgacacgttgaaaccggtagtaatataagaaaataaataa---caaataaattgaatgtaatcacatgtgtcgg |
107 |
Q |
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| T |
33079790 |
cacagataccgatgcaaataactacatgacacgttgaaaccggtagtaatataagaaaataaataataacaaataaattgaatgtaatcacatgtgtcgg |
33079691 |
T |
|
| Q |
108 |
acacgaacaaacatgtgtcataaaccggatacgtctttgatcagaaagaaatattggtgtttaaaagagaatgaaatgaaaaagtaggttatgatgatta |
207 |
Q |
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| T |
33079690 |
acacgaacgaacatgtatcagacacaggatacgtctctgatcagaaa----tatcgatgtttaaaagagaatgaaatgaaaaagtaggttatgatgatta |
33079595 |
T |
|
| Q |
208 |
cgtaccaatgaacagagagctccgatctatgacagagctctc------------tttgaaacggaatgaaagagaaggtggtgaaacggaaacggttatt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33079594 |
cgtaccaatgaacagagagctccgatctatgacagagctctctttgtctctctctttgaaacggaatgaaagagaaggtggtgaaaaggaaacggttatt |
33079495 |
T |
|
| Q |
296 |
gataaacgacggagaaacgaagggggaggtgctaacgtgcgc |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33079494 |
gataaacgacggagaaacgaagggggaggtgctaacgtgcgc |
33079453 |
T |
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