View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_high_22 (Length: 292)
Name: NF0865_high_22
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 284
Target Start/End: Complemental strand, 21549578 - 21549324
Alignment:
| Q |
30 |
aagtactcttctacaagaatatatcaagagcttgaacttagacaaaaatcccccaaaagagtatacaagaaaatcttcaactaaagccagtgacagtgag |
129 |
Q |
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| T |
21549578 |
aagtactcttctacaagaatatatcaagagcttgaacttagacaaaaatcccccaaaagagtatacaagaaaatcttcaactaaagccagtgacagtgag |
21549479 |
T |
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| Q |
130 |
tgtttgctaaccaaccaaagcacagtatcagctcagtctcagaaaggcagtgacagtgagtgtttgctatcaagcggtgattttgacgatgatatcctaa |
229 |
Q |
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| T |
21549478 |
tatttgctaaccaaccaaagcacaatatcagctcagtctcagaaagccaatgacagtcagtgtttgctatcaagcggtgattttgaagacgatatcctag |
21549379 |
T |
|
| Q |
230 |
atatttgtttcgatgataatatgtttcaagatgggtgtaatactgattctctgct |
284 |
Q |
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|||||||||||||||||||| |||||||||||||||||| || |||||||||||| |
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| T |
21549378 |
atatttgtttcgatgataatttgtttcaagatgggtgtagtattgattctctgct |
21549324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 34916925 - 34917004
Alignment:
| Q |
34 |
actcttctacaagaatatatcaagagcttgaacttagacaaaaatcccccaaaagagtatacaagaaaatcttcaactaa |
113 |
Q |
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|||||||||||| |||||||||||||||| ||| ||||| ||||||| || ||||| |||| ||||||| ||||| |||| |
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| T |
34916925 |
actcttctacaaaaatatatcaagagcttaaacctagacgaaaatcctccgaaagattatagaagaaaaccttcagctaa |
34917004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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