View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_high_5 (Length: 461)
Name: NF0865_high_5
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 23 - 453
Target Start/End: Original strand, 45302867 - 45303295
Alignment:
| Q |
23 |
catcatcatagtaggagactaacaggagaatcactgaaaactcattagagatggagcaggacatatagaaagggaatggaggcagagctcaacagctnnn |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302867 |
catcatcatagtaggagactaacaggagaatcactgaaaactcattagagatggagcaggacatatagaaagggaatggaggcagagctcaacagctggg |
45302966 |
T |
|
| Q |
123 |
nnnnttctgaacactgccacccttctacaaaataacatagtcctcataataaaaccataccagaacacaatgccaaggtaaactctaataaccatctgat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302967 |
ggggttctgaacactgccacccttctacaaaataacatagtcctcataataaaaccataccagaacacaatgccaaggtaaactctaataaccatctgat |
45303066 |
T |
|
| Q |
223 |
tcttgcaagataacttcnnnnnnnnnnnnncacacactcaattagcacaaacacttctccatattgacaagcccatcatgtagaattctacaggcttcca |
322 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303067 |
tcttgcaagataacttcaaaaaaaaaaa--cacacactcaattagcacaaacacttctccatattgacaagcccatcatgtagaattctacaggcttcca |
45303164 |
T |
|
| Q |
323 |
cggtctgcgtcctgttgcgctgaccagaaacttctgcataaacagtgcagctggatgtgcaccaccacctccaatctattaattatggtgaattaatctc |
422 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303165 |
cggtctgcgtcctgttgtgctgaccagaaacttctgcataaacagtgcagctggatgtgcaccaccacctccaatctattaattatggtgaattaatctc |
45303264 |
T |
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| Q |
423 |
atccacttaaatgccacccacttcctatgat |
453 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
45303265 |
atccacttaaatgccacccacttcctatgat |
45303295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 25738971 - 25738911
Alignment:
| Q |
304 |
agaattctacaggcttccacggtctgcgtcctgttgcgctgaccagaaacttctgcataaa |
364 |
Q |
| |
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||||||||||||| ||||| ||||||| | ||| || |||| | ||||||||||||||||| |
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| T |
25738971 |
agaattctacaggattccatggtctgcattctgctgtgctggcgagaaacttctgcataaa |
25738911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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