View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_11 (Length: 380)
Name: NF0865_low_11
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 32 - 369
Target Start/End: Original strand, 41622500 - 41622837
Alignment:
| Q |
32 |
aatatttggctttgaggatctttaacactatggcttggggttgagtcataactccaccctcgccgatacataaatttgacattggctataattatttggt |
131 |
Q |
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| T |
41622500 |
aatatttggctttgaggatctttaacactatggcttggggttgagtcataactccaccctcgccgatacataaatttgacattggctataattatttggt |
41622599 |
T |
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| Q |
132 |
acaatttatggattttaaggctgacctaccatgtggtaactatcgtaatggtttgcaattgcatagttgttttttaatagctatgctaattgcgaatgat |
231 |
Q |
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| T |
41622600 |
acaatttatggattttaaggctgacctaccatgtggtaactatcgtaatggtttgcaattgcatagttgttttttaatagctatgctaattgcgaatgat |
41622699 |
T |
|
| Q |
232 |
aaactctgtgtgtgctatattaaagtacatgtatgcaaggtgtggagtcgagagtcctgcattttgcagttctgtaaatgtttgatgtccagttctttct |
331 |
Q |
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| T |
41622700 |
aaactctgtgtgtgctatattaaagtacatgtatgcaaggtatggagtcgagagtcctgcattttgcagttctgtaaatgtttgatgtccagttctttct |
41622799 |
T |
|
| Q |
332 |
ttgatgtttacactttactggtaaagtccttgcttcat |
369 |
Q |
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| T |
41622800 |
ttgatgtttacactttactggtaaagtccttgcttcat |
41622837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 49161654 - 49161716
Alignment:
| Q |
188 |
aattgcatagttgttttttaatagctatgctaattgcgaatgataaactctgtgtgtgctata |
250 |
Q |
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|||||||||||||||||||||||||| | ||||||| |||||||||||| || ||||||||| |
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| T |
49161654 |
aattgcatagttgttttttaatagctgtattaattgctaatgataaactcggtatgtgctata |
49161716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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