View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0865_low_14 (Length: 363)
Name: NF0865_low_14
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 79 - 334
Target Start/End: Original strand, 29727023 - 29727280
Alignment:
| Q |
79 |
gaagaatatcgagaatgagtttgtatctgagtgatcccccgatgaacatggttagtagtagtagctgtctttagtagtagtggcatgggaagtgttaagg |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29727023 |
gaagaatatcgagaatgagtttgtatctgagtgatcccccgatgaacatggttagtagtaatagctgtctttagtagtagtggcatgggaagtgttaagg |
29727122 |
T |
|
| Q |
179 |
aaaacatgttagtgataatgtgaatatggttagtgataacgatttggctaatgtgggaaatggaaggtggttattgttattacgtag--taatgtagttt |
276 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
29727123 |
aaaacatgttagtaataatgtgaatatggttagggataacgatttggctaatgtgggaaatggaaggtggttattgtttttacgtagtataatgtagttt |
29727222 |
T |
|
| Q |
277 |
agtaggatgtcttatttataattaaaaaatgtgttgttgaaacttgattggttgtgct |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29727223 |
agtaggatgtcttatttataattaaaaaatgtgttgttgaaacttgattggttgtgct |
29727280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1451 times since January 2019
Visitors: 6143