View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_15 (Length: 358)
Name: NF0865_low_15
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 345
Target Start/End: Complemental strand, 32345898 - 32345598
Alignment:
| Q |
30 |
cttcaacccctgaaatgtgcttctctgtcct-ttgaagaattttctgctctcaactatagcttaacacacaagaaatccttagttgtaccattcttgtgc |
128 |
Q |
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| T |
32345898 |
cttcaactcctgaaatgtgcttctctgtcctcttgaagaattttctgctctcaactatagctt----------------tgtgttgtaccattcttgtgc |
32345815 |
T |
|
| Q |
129 |
caccgtttgtctccacctagtccactagtggaaggatccacctcaagatgagatttctccatctcaatattcaaatgtgtacatccactaattgactatg |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
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| T |
32345814 |
caccgtttgtctccacctagtccactagtggaaggatccacctcaggatgagatttctccatctcaacattcaaatgtgcacatccactaattgagtatg |
32345715 |
T |
|
| Q |
229 |
taggtcataaagtcctcagactgagtaaaaactaagtggtattggacaaagatgcacaaaagccagatttcatgtttgtagcaccattaaccgcaaagag |
328 |
Q |
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| T |
32345714 |
tgggtcataaagtcctcagactgagtcaaaactaagtggtactgaacaaagatgcacaaaatccagatttcatgtttgtagcaccattaactgcaaagag |
32345615 |
T |
|
| Q |
329 |
ggatgaaggaagacaca |
345 |
Q |
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| T |
32345614 |
ggatgaaggaagacaca |
32345598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 215
Target Start/End: Original strand, 18198325 - 18198480
Alignment:
| Q |
61 |
ttgaagaattttctgctctcaactatagcttaacacacaagaaatccttagttgtaccattcttgtgccaccgtttgtctccacctagtcc-actagtgg |
159 |
Q |
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| T |
18198325 |
ttgaagaatttcttgctctcaactagaacataacacacaatgactctatagttgtaccgtttcggtgacaccatttttctcctcctagtcccactagtgg |
18198424 |
T |
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| Q |
160 |
aaggatccacctcaagatgagatttctccatctcaatattcaaatgtgtacatcca |
215 |
Q |
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| T |
18198425 |
aagaatccacatcaagttgagttttctccacctcaactttcaaatgtgtacatcca |
18198480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 16136345 - 16136232
Alignment:
| Q |
74 |
tgctctcaactatagcttaacacacaagaaatccttagttgtaccattcttgtgccaccgtttgtctccacctagt-ccactagtggaaggatccacctc |
172 |
Q |
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| T |
16136345 |
tgctttcaactaaagcataacacacaaggactacatagttgtac-attcttatgccaccatttgtctccacctagtcccgatagtggaagactccatctc |
16136247 |
T |
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| Q |
173 |
aagatgagatttctc |
187 |
Q |
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| T |
16136246 |
aagatgagatttctc |
16136232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 27907610 - 27907501
Alignment:
| Q |
105 |
tccttagttgtaccattcttgtgccaccgtttgtctccacctagtcc-actagtggaaggatccacctcaagatgagatttctccatctcaatattcaaa |
203 |
Q |
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| T |
27907610 |
tccttagttgtaccattgtgcttcccccatttgtctccacctattcccactagtggaagactccacctcaaaccgagtcttcttcatctcaacttccaaa |
27907511 |
T |
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| Q |
204 |
tgtgtacatc |
213 |
Q |
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|||||||||| |
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| T |
27907510 |
tgtgtacatc |
27907501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 27646388 - 27646460
Alignment:
| Q |
269 |
attggacaaagatgcacaaaagccagatttcatgtttgtagcaccattaaccgcaaagagggatgaaggaaga |
341 |
Q |
| |
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|||| |||| ||||||||||| ||| ||| ||||||||| || | ||||||||||||||||||| |||||| |
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|
| T |
27646388 |
attgtacaatgatgcacaaaatccacgttttgtgtttgtagaacaactaaccgcaaagagggatgagggaaga |
27646460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 38281465 - 38281324
Alignment:
| Q |
74 |
tgctctcaactatagcttaacacacaagaaatccttagttgtaccattcttgtgccaccgtttgtctccacctagtcc-actagtggaaggatccacctc |
172 |
Q |
| |
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||||||| |||| ||| ||||| |||| | ||| ||||| ||||||| | | |||||| || |||| | |||||||| ||||||||||| || | ||| |
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| T |
38281465 |
tgctctccactagagcacaacacgcaaggactccatagttttaccattatggggccaccattagtctactcctagtcccactagtggaagactcaaactc |
38281366 |
T |
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| Q |
173 |
aagatgagatttctccatctcaatattcaaatgtgtacatcc |
214 |
Q |
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| T |
38281365 |
aagttgagctttctccacctcaacttccaaatgtgtacatcc |
38281324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 8281888 - 8281936
Alignment:
| Q |
279 |
gatgcacaaaagccagatttcatgtttgtagcaccattaaccgcaaaga |
327 |
Q |
| |
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||||||||||| ||| ||||||||||||||| ||| |||||||||||| |
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| T |
8281888 |
gatgcacaaaacccatgtttcatgtttgtagcgccactaaccgcaaaga |
8281936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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