View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_17 (Length: 353)
Name: NF0865_low_17
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 291
Target Start/End: Original strand, 43530904 - 43531165
Alignment:
| Q |
30 |
gtttttgtattctttcccttataacatttataattttaagttcgataggttgagttagatgtggcgttaagcatggttttgtccaaagactagaccatgt |
129 |
Q |
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| T |
43530904 |
gtttttgtattctttcccttataacatttataattttaagttcgttaggttgagttagatgtggcgttaagcatggttttgtccaaagactagaccatgt |
43531003 |
T |
|
| Q |
130 |
atgcaactgttctagtggtagtttcagccagttgtgtcctatttacacacttgaatcccaatttgttgtaatttgattttgctcctcggattaattttaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43531004 |
atgcaactgttctagtggtagtttcagccagttgtgtcctatttacacacttgaatcccaatttgttgtaatttgattttgctcctcggattaattttaa |
43531103 |
T |
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| Q |
230 |
ctaaaaagtttacacttttctctaaagtaatcagaaccagacccgttggttggagatctgtg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43531104 |
ctaaaaagtttacacttttctctaaagtaatcagaaccagacccgttggttggagatctgtg |
43531165 |
T |
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