View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_18 (Length: 335)
Name: NF0865_low_18
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 34914886 - 34915192
Alignment:
| Q |
1 |
tgtatgacatactcaactcnnnnnnnttcgaccttttgactatacacaccaaaagattgtctcccgtttttggtttcttcggctctaactaatttgcttg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34914886 |
tgtatgacatactcaactcaaaaaaattcgaccttttgactatacacactaaaagattgtctcccgtttttggtttcttcggctctaactaatttgcctg |
34914985 |
T |
|
| Q |
101 |
cagcgttactcctgcattaacataactaattacgtatatgaaataaaaattaaagaactatatgcactaaacccc-caaagaaaaaactatatgcactaa |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
34914986 |
cagcgttactcctgcattaacataactaattacgtatatgaaataaaaattaaagaactatatgcactaaacccctcaaagaaaaaactatatgcactaa |
34915085 |
T |
|
| Q |
200 |
tgattattcaaaattctcattacgtcnnnnnnnnnnnnnnnnnnntgttctttgcatttgttttgacctgcattatttaacacttattaatttccttctc |
299 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34915086 |
tgattattcaaaattctcattacgtcaaaaacaaaaaagtaaaaatgttctttgcatttgtgttgacctgcattatttaacacttattaatttccttctc |
34915185 |
T |
|
| Q |
300 |
ttgttaa |
306 |
Q |
| |
|
||||||| |
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|
| T |
34915186 |
ttgttaa |
34915192 |
T |
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