View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_2 (Length: 631)
Name: NF0865_low_2
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 46600632 - 46600268
Alignment:
| Q |
8 |
ccaacaatattgtccattaactactacttctaccctaatactattatattcactcaccgtcttaatttccctgccctacttattcagtacgagaatgatt |
107 |
Q |
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| T |
46600632 |
ccaacaaaattgtccattaactactacttctaccctaatactattatattcactcaccgtcttaatttccctgccctacttattcagtacgagaatgatt |
46600533 |
T |
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| Q |
108 |
tttatgatttatataccctctttcatttctatttttgtgctatctttcttgctcctccgtatacagacctgtattgtatatatttgcattattactctct |
207 |
Q |
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| T |
46600532 |
tt-atgatttatataccctctttcatttctatttttgtgctatctttcttgctcctccgtatacagacctgtattgtatatatttgcattattactctct |
46600434 |
T |
|
| Q |
208 |
agctacttacttaatcattctaatcttataatctacagctgtgaaaatgtggtaccgaacctatacctagctcttcttaatttggtttatgtgacctagc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
46600433 |
agctacttacttaatcattctaatcttataatctacagctgtgaaaatgtggtaccgaacctatacctagctcttcttaatttggtttatgtgac----c |
46600338 |
T |
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| Q |
308 |
taggttactctaatttatatattgatctaactccaaagttctctgcctaactgttatcattataagtgct |
377 |
Q |
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| T |
46600337 |
taggttactctaatttatatattgatctaactccaaagttctctgcctaactgttatcattataagtgct |
46600268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 439 - 563
Target Start/End: Complemental strand, 46600269 - 46600146
Alignment:
| Q |
439 |
cttaaaaatgtgagcataatttaaccaattggtaggcgtaggttaaaatgatttatgaatttcatttaatgaaaaacaattcaaatgttttagggcttga |
538 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46600269 |
cttaaaaatgtgagcataatttaaccaattggtag-cgtaggttaaaatgatttatgaatttcatttaatgaaaaacaattcaaacgttttagggcttga |
46600171 |
T |
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| Q |
539 |
atcctctttaaaacaatattttgtt |
563 |
Q |
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||||||||||||||||||||||||| |
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| T |
46600170 |
atcctctttaaaacaatattttgtt |
46600146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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