View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0865_low_21 (Length: 318)

Name: NF0865_low_21
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0865_low_21
NF0865_low_21
[»] chr4 (1 HSPs)
chr4 (55-314)||(45627220-45627492)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 55 - 314
Target Start/End: Original strand, 45627220 - 45627492
Alignment:
Q  55 gtatagtctatataaaaatgaaataaaataatctttatttttcgtggattagatttaactttttgtttatatgaatgaatatgaatgaattt-------- 146  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||            
T  45627220 gtataatctatataaaaatgaaataaaataatctttattttttgtggattagatttaactttttgtttatatgaatgaatatcaatgaatttagaaattt 45627319  T
Q  147 ggaaataatgcacgcaaatacgtagcaatagcatagca-----tagagacgtgcgcccctaaagtgacttttaatactgtattttgtatctttttgcttt 241  Q
    ||||||||||||| ||||||||||||||||||||||||     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45627320 ggaaataatgcacacaaatacgtagcaatagcatagcaaagcatagagacgtgcacccctaaagtgacttttaatactgtattttgtatctttttgcttt 45627419  T
Q  242 gtctactttttctgaaaagatacttattcgtaataaaagacgtcagcaaggacgtcattatcaaatcttaatg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45627420 gtctactttttctgaaaagatacttattcgtaataaaagacgtcagcaaggacgtcattatcaaatcttaatg 45627492  T

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