View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_23 (Length: 307)
Name: NF0865_low_23
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 45122521 - 45122673
Alignment:
| Q |
2 |
aaaatctctggatattaatctccaagagtcgtttgttacaacttattttgtnnnnnnntttactttttctttaaatataatcactcctgaaaattttcat |
101 |
Q |
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| T |
45122521 |
aaaatctctggatattaatctccaagagtcgtttgttagaacttattttgtaaaaaaatttagtttttctttaaatataatcactcctgaaaattttcat |
45122620 |
T |
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| Q |
102 |
ctgtttgttacagattctttaaaaaatgaaccaatctgaaaatattataaaaa |
154 |
Q |
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| T |
45122621 |
ctgtttgttacagattctttaaaaaatgaaccaatctgaaaatattataaaaa |
45122673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 45122714 - 45122774
Alignment:
| Q |
149 |
taaaaataattttcagtaagtgattttgttttcggtaaacaaacacaactccacttctgta |
209 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45122714 |
taaaaataattttcagtaagtgattttcttttcggtaaacaaacacaactccacttctgta |
45122774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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