View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_24 (Length: 307)
Name: NF0865_low_24
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 29 - 294
Target Start/End: Complemental strand, 42805667 - 42805402
Alignment:
| Q |
29 |
aggaatagaccagtgtcattttcacatctaactaaattttcaaactaatatataatatcatgagatgaagacagacacaagttcgcgatcactatctata |
128 |
Q |
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| T |
42805667 |
aggaatagaccagtgtcattttcacatctaactaaattttcaaactgatatataatatcatgagatgaagacagacacaagttcgcgatcactatctata |
42805568 |
T |
|
| Q |
129 |
tcttctttctaatttcttctatgaatttaatatgtatgcgtgaaaatatattttacacatgcattcaatcgtgtgttgtcacattacattgtgtattgta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
42805567 |
tcttctttctaatttcttctatgaatttaatatgtatgcgtgaaaatatattttacacatgcattcaaccgtgtgttgtcacgttacattgtgtattgta |
42805468 |
T |
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| Q |
229 |
tataaaaacaactaatttgtttgattcagtaaataacataacaacacatggttgaacgttgaatct |
294 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
42805467 |
tataaaaacaactaatttgtttgattcaataaataacatgacaacacatggttgagcgttgaatct |
42805402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 35970439 - 35970472
Alignment:
| Q |
177 |
tattttacacatgcattcaatcgtgtgttgtcac |
210 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
35970439 |
tattttacacatgcattcaatcatgtgttgtcac |
35970472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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