View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_37 (Length: 286)
Name: NF0865_low_37
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_37 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 24285889 - 24285622
Alignment:
| Q |
12 |
atcaagagccatctccaactctaagaagagttgagaagaaccaaccacaataaccattttcaattctaaaagtataaccgcggtgcgttgaatatagaaa |
111 |
Q |
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| T |
24285889 |
atcaagagccatctccaactctaagaagagttgagaagaaccat----aataaccattttcaattctaaaagtataaccgcggtgcgttgaatatagaaa |
24285794 |
T |
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| Q |
112 |
atcaattatggagagatggaaatataagtatgagatgttcaaaataattaacataaaacatagataaaatatctgatgaaatagtagtcgatatatcaac |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24285793 |
atcaattatggagagatggaaatataagtatgagatgttcaaaataatttaaataaaacatagataaaatatctgatgaaatagtagtcgatatatcaac |
24285694 |
T |
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| Q |
212 |
tacactacaggtctaattatgtttgtaaaccaagtgttcatagaggaaaataattggtcatttcgctttcttaat |
286 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24285693 |
ta---tacaggtctaattatgtttgtaaaccaagtgttcatagaggaaaataattggtcatttcgctttcttaat |
24285622 |
T |
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