View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_38 (Length: 284)
Name: NF0865_low_38
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 19476879 - 19476691
Alignment:
| Q |
1 |
atccaaaccttgatcatttgaccattttgtccaacccttttgatcaataaaatcatcaatataagactcaattaaaaccgttctagaaaaaacccgccac |
100 |
Q |
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| T |
19476879 |
atccaaaccttgatcatttgaccatttggtccaacccttttgatcaataaaatcatcaatataagactcaattaaaaccgttctagaaaaaaccctccac |
19476780 |
T |
|
| Q |
101 |
ggcctcccaaggtaactcttgaccttactagagtttgaataaagctcatccgtagcaataatcgaacaattttggattgaaattcccgt |
189 |
Q |
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| T |
19476779 |
ggcctcccaaggtaactcttgaccttactagagtttgaataaagctcatccgtagcgataatcgaacaattttggattgaaattcccgt |
19476691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 51548427 - 51548325
Alignment:
| Q |
20 |
gaccattttgtccaacccttttgatcaataaaatcatcaatataagactcaattaaaaccgttctagaaaaaacccgccacggcctcccaaggtaactct |
119 |
Q |
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|||||||| ||||| ||| || ||||||| || ||||||| ||||||||||| ||||| || |||||| |||||| ||| ||||| ||||||||||||| |
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| T |
51548427 |
gaccatttcgtccatcccattggatcaatgaacacatcaatgtaagactcaatgaaaacagtcctagaataaaccctccaaggccttccaaggtaactct |
51548328 |
T |
|
| Q |
120 |
tga |
122 |
Q |
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||| |
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| T |
51548327 |
tga |
51548325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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