View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_44 (Length: 273)
Name: NF0865_low_44
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 722380 - 722518
Alignment:
| Q |
35 |
aatactgcaaagatccaaaacttgttacagcagatgatttcttttactcagtaaaagaaggagttgtatcgagtccagttggttctcaagtgacattagt |
134 |
Q |
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| T |
722380 |
aatactgcaaagatccaaaacttgttacagcagatgatttctttttctcagtaaaagaaggagttgtatcgagtccagttggtactcaagtgacattagt |
722479 |
T |
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| Q |
135 |
gacagttaatgagatattaggattaaacactcttggtgt |
173 |
Q |
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| T |
722480 |
cacagttaatgagatattaggattaaacactcttggtgt |
722518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 716506 - 716635
Alignment:
| Q |
42 |
caaagatccaaaacttgttacagcagatgatttcttttactcagtaaaagaaggagttgtatcgagtccagttggttctcaagtgacattagtgacagtt |
141 |
Q |
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| T |
716506 |
caaagaaccaaaacttgttacaccagatgatttctttttctcaataaaagaagaaaacatatcaagtcaacttggttcgcaagtgacactacccacagtt |
716605 |
T |
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| Q |
142 |
aatgagatattaggattaaacactcttggt |
171 |
Q |
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| T |
716606 |
agtgagatattaggattaaatactcttggt |
716635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 718095 - 718038
Alignment:
| Q |
39 |
ctgcaaagatccaaaacttgttacagcagatgatttcttttactcagtaaaagaagga |
96 |
Q |
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| T |
718095 |
ctgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtaaaagaagga |
718038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 702792 - 702736
Alignment:
| Q |
40 |
tgcaaagatccaaaacttgttacagcagatgatttcttttactcagtaaaagaagga |
96 |
Q |
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| T |
702792 |
tgcaaggatccaaagcttgctacaccaaatgatttctttttctcagtaaaagaagga |
702736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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