View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0865_low_51 (Length: 268)

Name: NF0865_low_51
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0865_low_51
NF0865_low_51
[»] chr3 (1 HSPs)
chr3 (32-241)||(41622500-41622709)
[»] chr7 (1 HSPs)
chr7 (188-237)||(49161654-49161703)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 32 - 241
Target Start/End: Original strand, 41622500 - 41622709
Alignment:
Q  32 aatatttggctttgaggatctttaacactatggcttggggttgagtcataactccaccctcgccgatacataaatttgacattggctataattatttggt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41622500 aatatttggctttgaggatctttaacactatggcttggggttgagtcataactccaccctcgccgatacataaatttgacattggctataattatttggt 41622599  T
Q  132 acaatttatggattttaaggctgacctaccatgtggtaactatcgtaatggtttgcaattgcatagttgttttttaatagctatgctaattgcgaatgat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41622600 acaatttatggattttaaggctgacctaccatgtggtaactatcgtaatggtttgcaattgcatagttgttttttaatagctatgctaattgcgaatgat 41622699  T
Q  232 aaactctgtg 241  Q
    ||||||||||    
T  41622700 aaactctgtg 41622709  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 49161654 - 49161703
Alignment:
Q  188 aattgcatagttgttttttaatagctatgctaattgcgaatgataaactc 237  Q
    |||||||||||||||||||||||||| |  ||||||| ||||||||||||    
T  49161654 aattgcatagttgttttttaatagctgtattaattgctaatgataaactc 49161703  T

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