View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0865_low_52 (Length: 261)
Name: NF0865_low_52
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 25685458 - 25685712
Alignment:
| Q |
1 |
caaatcttatctcatctatttttattgggaacccaaggcatctatggatatattttattccctcaattcatattcttcacttcnnnnnnnnnctacttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25685458 |
caaatcttatctcatctatttttattgggaacccaaggcatctatggatatattttattccctcaattcatattcttcactt-tttttttttctacttaa |
25685556 |
T |
|
| Q |
101 |
aattcnnnnnnnnnncttgagtgtgaattatatttactattcataagtgggaatatattttagggtaaactcaaccctagtatttaaatataatttctat |
200 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25685557 |
aatt-ttttttttttctcgagtgtgaattatatttactattcataagtgggaatatattttagggtaaactcaaccctagtatttaaatataatttctat |
25685655 |
T |
|
| Q |
201 |
tatacaatactatgttgacattgattttgaagtgtttataatttgttatttgtctca |
257 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25685656 |
tatacaatattatgttgacgttgattttgaagtgtttgcaatttgttatttgtctca |
25685712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 35035128 - 35035091
Alignment:
| Q |
221 |
ttgattttgaagt-gtttataatttgttatttgtctca |
257 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35035128 |
ttgattttgaagttgtttataatttgttatttgtctca |
35035091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1896 times since January 2019
Visitors: 6151