View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_54 (Length: 254)
Name: NF0865_low_54
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 43965739 - 43965895
Alignment:
| Q |
75 |
atcataggcttcatagggaaaatcaacgtcgattcctctgatcttgtacgtcggcattttcttggttcctgattgaaaccgaaaacagaaatgaatcaat |
174 |
Q |
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| T |
43965739 |
atcataggcttcatagggaaaatcaacgtcgattcctctgatcttgtacgtcggcattttcttggttcctgattgaaaccgaaaacagaaatgaatcaat |
43965838 |
T |
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| Q |
175 |
gcttttctcccagagtttgcatttgtatgaactttgattgaagaagaaagatgtatt |
231 |
Q |
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| T |
43965839 |
gcttttctcccagagtttgcatttgtatgaactttggttgaagaggaaagatgtatt |
43965895 |
T |
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