View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0865_low_57 (Length: 249)

Name: NF0865_low_57
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0865_low_57
NF0865_low_57
[»] chr6 (6 HSPs)
chr6 (28-249)||(722487-722708)
chr6 (30-248)||(716608-716823)
chr6 (28-249)||(702472-702690)
chr6 (28-245)||(712748-712962)
chr6 (28-249)||(717774-717992)
chr6 (28-249)||(710741-710959)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 722487 - 722708
Alignment:
Q  28 aatgagatattaggattaaacactcttggtgtctctcttgctcgtattgactttgcacctaagggtataaatcctccacacactcaccctagagccactg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  722487 aatgagatattaggattaaacactcttggtgtctctcttgctcgtattgactttgcacctaagggtataaatcctccacacactcaccctagagccactg 722586  T
Q  128 aaatacttatggtgttagatggtactctcaatgttggcttttatacttctaatcaagaaagtagtactcccattacaaaagatctcaacaaaggagatgt 227  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  722587 agatacttatggtgttagatggtactctcaatgttggcttttatacttctaatcaagaaagtagtactcccattacaaaagatctcaacaaaggagatgt 722686  T
Q  228 ttttgtgtttccaattggtctc 249  Q
    ||||||||||||||||||||||    
T  722687 ttttgtgtttccaattggtctc 722708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 716608 - 716823
Alignment:
Q  30 tgagatattaggattaaacactcttggtgtctctcttgctcgtattgactttgcacctaagggtataaatcctccacacactcaccctagagccactgaa 129  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||| |||||| |||||||||||||  |||||||||||||  ||||     
T  716608 tgagatattaggattaaatactcttggtatctcttttgctcgtattgattttgcaccaaagggtctaaatcctccacatgctcaccctagagcagctgag 716707  T
Q  130 atacttatggtgttagatggtactctcaatgttggcttttatacttctaatcaagaaagtagtactcccattacaaaagatctcaacaaaggagatgttt 229  Q
    |||||||| ||||| || |||||||||||||| || |||  ||||||||| | |||||   |   || ||||||||||| ||| |||||||||||||| |    
T  716708 atacttatagtgttggagggtactctcaatgtcggttttgttacttctaacccagaaaaccg---tctcattacaaaagttcttaacaaaggagatgtct 716804  T
Q  230 ttgtgtttccaattggtct 248  Q
    |||||||||||||||||||    
T  716805 ttgtgtttccaattggtct 716823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 702690 - 702472
Alignment:
Q  28 aatgagatattaggattaaacactcttggtgtctctcttgctcgtattgactttgcacctaagggtataaatcctccacacactcaccctagagccactg 127  Q
    ||||| ||| ||||| |||||||| | ||| ||||||||||||| |||||||| ||| | | |||  ||||||||||||| |||||||||||||||||||    
T  702690 aatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatcaaggggactaaatcctccacatactcaccctagagccactg 702591  T
Q  128 aaatacttatggtgttagatggtactctcaatgttggcttttatacttctaatcaagaaagtagtactcccattacaaaagatctcaacaaaggagatgt 227  Q
    | |||||||| |||||||| ||||| ||  |||| || |||  ||||||||||| |||||   |   || |||||||||||  || ||||||||||||||    
T  702590 agatacttatagtgttagagggtacactatatgtcgggtttgttacttctaatccagaaaaccg---tctcattacaaaagtactgaacaaaggagatgt 702494  T
Q  228 ttttgtgtttccaattggtctc 249  Q
     |||||||||||||||||||||    
T  702493 gtttgtgtttccaattggtctc 702472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 712748 - 712962
Alignment:
Q  28 aatgagatattaggattaaacactcttggtgtctctcttgctcgtattgactttgcacctaagggtataaatcctccacacactcaccctagagccactg 127  Q
    ||||| ||| ||||| |||||||| | ||| ||||||||||||| |||||||| ||| ||| |||  ||||||||||||| |||||||||||||||||||    
T  712748 aatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatctaggggactaaatcctccacatactcaccctagagccactg 712847  T
Q  128 aaatacttatggtgttagatggtactctcaatgttggcttttatacttctaatcaagaaagtagtactcccattacaaaagatctcaacaaaggagatgt 227  Q
    | || ||||| ||||| || ||||||||| |||| || |||  ||||||||||| |||||   |   || |||||||||||  || ||||||||||||||    
T  712848 agattcttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaaccg---tctcattacaaaagtactgaacaaaggagatgt 712944  T
Q  228 ttttgtgtttccaattgg 245  Q
     |||||||||||||||||    
T  712945 gtttgtgtttccaattgg 712962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 717992 - 717774
Alignment:
Q  28 aatgagatattaggattaaacactcttggtgtctctcttgctcgtattgactttgcacctaagggtataaatcctccacacactcaccctagagccactg 127  Q
    ||||| ||| ||||| |||||||| | ||| ||||||||||||| |||||||| ||| ||| |||  ||||||||||||| |||||||||||||||||||    
T  717992 aatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatctaggggactaaatcctccacatactcaccctagagccactg 717893  T
Q  128 aaatacttatggtgttagatggtactctcaatgttggcttttatacttctaatcaagaaagtagtactcccattacaaaagatctcaacaaaggagatgt 227  Q
    | |||||||| |||||||| ||||| ||  |||| || |||  ||||||||||| |||||   |   || ||| |||||||  || ||||||||||||||    
T  717892 agatacttatagtgttagagggtacactatatgtcgggtttgttacttctaatccagaaaaccg---tctcataacaaaagtactaaacaaaggagatgt 717796  T
Q  228 ttttgtgtttccaattggtctc 249  Q
     |||||||||||||||||||||    
T  717795 gtttgtgtttccaattggtctc 717774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 710959 - 710741
Alignment:
Q  28 aatgagatattaggattaaacactcttggtgtctctcttgctcgtattgactttgcacctaagggtataaatcctccacacactcaccctagagccactg 127  Q
    ||||| ||| ||||| |||||||| | ||| ||||||||||||| |||||||| ||| | | |||  ||||||| ||||| |||||||||||||||||||    
T  710959 aatgatatactaggactaaacactttaggtatctctcttgctcgcattgacttcgcatcaaggggactaaatcccccacatactcaccctagagccactg 710860  T
Q  128 aaatacttatggtgttagatggtactctcaatgttggcttttatacttctaatcaagaaagtagtactcccattacaaaagatctcaacaaaggagatgt 227  Q
    | || ||||| ||||| || ||||||||| |||| || |||  ||||||||||| |||||   |   || ||| |||||||  || ||||||||||||||    
T  710859 agattcttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaaccg---tctcatcacaaaagtactgaacaaaggagatgt 710763  T
Q  228 ttttgtgtttccaattggtctc 249  Q
     |||||||||||||||||||||    
T  710762 gtttgtgtttccaattggtctc 710741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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