View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0865_low_59 (Length: 227)

Name: NF0865_low_59
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0865_low_59
NF0865_low_59
[»] chr5 (9 HSPs)
chr5 (1-150)||(16474294-16474444)
chr5 (149-221)||(20209175-20209247)
chr5 (149-221)||(6048836-6048908)
chr5 (149-221)||(34874895-34874967)
chr5 (149-221)||(4416156-4416228)
chr5 (149-221)||(4922846-4922918)
chr5 (149-221)||(7001221-7001293)
chr5 (149-221)||(40089951-40090023)
chr5 (149-221)||(20591748-20591820)
[»] chr8 (4 HSPs)
chr8 (149-221)||(45256284-45256356)
chr8 (149-221)||(23679775-23679847)
chr8 (149-221)||(17658442-17658515)
chr8 (149-221)||(26031104-26031176)
[»] chr4 (17 HSPs)
chr4 (149-221)||(20395208-20395280)
chr4 (149-221)||(12881141-12881213)
chr4 (149-218)||(53779660-53779729)
chr4 (149-221)||(18935280-18935352)
chr4 (149-221)||(10563765-10563837)
chr4 (149-221)||(18107012-18107084)
chr4 (149-221)||(29213437-29213508)
chr4 (149-221)||(30274268-30274340)
chr4 (149-202)||(42777869-42777922)
chr4 (149-221)||(53487409-53487481)
chr4 (149-208)||(34322775-34322834)
chr4 (149-208)||(42823069-42823128)
chr4 (160-221)||(1844724-1844785)
chr4 (149-221)||(449663-449735)
chr4 (149-221)||(31863878-31863950)
chr4 (150-202)||(52741295-52741347)
chr4 (157-221)||(55854406-55854470)
[»] chr1 (17 HSPs)
chr1 (149-221)||(49968939-49969011)
chr1 (149-222)||(47586933-47587006)
chr1 (149-221)||(9903721-9903793)
chr1 (149-221)||(41061600-41061672)
chr1 (149-221)||(41181822-41181894)
chr1 (149-221)||(10711569-10711641)
chr1 (149-220)||(47107136-47107207)
chr1 (149-202)||(30111380-30111433)
chr1 (149-205)||(21344214-21344270)
chr1 (149-205)||(21349079-21349135)
chr1 (149-208)||(17707621-17707680)
chr1 (149-221)||(25591930-25592002)
chr1 (150-202)||(40292542-40292594)
chr1 (149-199)||(26720333-26720383)
chr1 (152-221)||(10722649-10722718)
chr1 (149-183)||(21335678-21335712)
chr1 (149-213)||(12173828-12173892)
[»] chr7 (7 HSPs)
chr7 (149-222)||(7459127-7459200)
chr7 (149-221)||(4076887-4076959)
chr7 (149-221)||(28060190-28060262)
chr7 (149-221)||(34231311-34231383)
chr7 (149-216)||(10282276-10282343)
chr7 (149-221)||(29114005-29114077)
chr7 (187-221)||(46177867-46177901)
[»] chr3 (15 HSPs)
chr3 (149-221)||(24124297-24124369)
chr3 (149-221)||(25341790-25341862)
chr3 (153-221)||(19221739-19221807)
chr3 (149-221)||(26845483-26845555)
chr3 (149-221)||(47536880-47536952)
chr3 (149-221)||(32093373-32093442)
chr3 (149-221)||(11639578-11639650)
chr3 (149-221)||(50543833-50543905)
chr3 (149-221)||(8695347-8695419)
chr3 (149-221)||(9047234-9047306)
chr3 (149-216)||(46909123-46909190)
chr3 (149-221)||(36635050-36635122)
chr3 (149-208)||(33121773-33121832)
chr3 (149-216)||(46665097-46665164)
chr3 (149-201)||(43122122-43122174)
[»] scaffold0308 (1 HSPs)
scaffold0308 (149-221)||(11690-11762)
[»] chr6 (6 HSPs)
chr6 (149-221)||(11061312-11061384)
chr6 (149-221)||(33722665-33722737)
chr6 (149-221)||(17079647-17079719)
chr6 (149-221)||(17874257-17874329)
chr6 (149-202)||(9199708-9199761)
chr6 (149-218)||(26526146-26526215)
[»] chr2 (4 HSPs)
chr2 (149-221)||(30273612-30273684)
chr2 (149-221)||(3000204-3000276)
chr2 (149-221)||(7075724-7075796)
chr2 (149-200)||(1379715-1379766)
[»] scaffold0179 (1 HSPs)
scaffold0179 (149-221)||(7140-7212)
[»] scaffold0007 (1 HSPs)
scaffold0007 (149-221)||(181741-181813)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 16474294 - 16474444
Alignment:
Q  1 ctaaaaagaaaagatcttaaattcaaaagttgaatatttaaattttgttggttcctatttataattgttctattcagaaatcaaacttaaaaaattaagt 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  16474294 ctaaaaagaaaagatcttgaattcaaaagttgaatatttaaattttgttgatttctatttataattgttctattcagaaatcaaacttaaaaaattaagt 16474393  T
Q  101 attcttttaaaattgacagtaatat--aagtagacaatcttctctcataaaa 150  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  16474394 attcttttaaaattgacagtaatataaaagtagacaatc-tctctcataaaa 16474444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 20209175 - 20209247
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||| |||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||    
T  20209175 aaatttatgtctttagcatggttgaaagccaaaaaggttgtttttaggtttggtacagataggtggtgctcaa 20209247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 6048908 - 6048836
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||  |||||| ||||    
T  6048908 aaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggtatagatatgtggtgttcaa 6048836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 34874895 - 34874967
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||| |||||| | ||||||||||||||||  |||| ||||||||||||    
T  34874895 aaatatatgtctttagcctggttgaaagtcaaaaaagttgtttttaggtttggtttagataggtggtgctcaa 34874967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 4416156 - 4416228
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||  |||||| ||||    
T  4416156 aaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggtgttcaa 4416228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 4922918 - 4922846
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||| |||||| ||||| ||||||||||||||||  | |||||||||||||||||||||| ||||||||||||    
T  4922918 aaatttatgtccttagcatggttgaaagccaaaagggttgtttttaggtttggtacagataggtggtgctcaa 4922846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 7001221 - 7001293
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||| ||||||| |||||| | |||||||||||||||| ||||| |||||| |||||    
T  7001221 aaatatatgtctttagcctgattgaaagtcaaaaaggttgtttttaggtttggttcagataggtggttctcaa 7001293  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 40090023 - 40089951
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||| ||||||||||||||||| | || |||||||||||||| |||| ||||||| ||||    
T  40090023 aaatatatgtctttagcttggttgaaagccaaaaaggttggttttaggtttggtatagataggtggtgttcaa 40089951  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 20591820 - 20591748
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||| |||||||||||||| ||||| ||||||| ||||  |||| |||||| |||||| | ||||| ||||    
T  20591820 aaatatttgtctttagcctggatgaaatccaaaaaggctgcctttaagtttggcacagatagatggtgttcaa 20591748  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 45256284 - 45256356
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  45256284 aaatatatgtctttagcctggttgaaagccaaaaatgttgtttttaggtttggtacagatatgtggtgctcaa 45256356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 23679847 - 23679775
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||| |||||    
T  23679847 aaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggttcagataggtggtactcaa 23679775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 17658515 - 17658442
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagc-caaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||||  |||||  ||||||||||||||||| ||||| ||||||||||||    
T  17658515 aaatatatgtctttagcctggttgaaagcaaaaaaaaactgtttttaggtttggttcagataggtggtgctcaa 17658442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 26031176 - 26031104
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||| |||||||||||| ||| ||||||||||||| | ||||||||| |||||||||||| ||||||||||||    
T  26031176 aaatttatgtctttagcatggctgaaagccaaaaaggttgtttttagatttggtacagataggtggtgctcaa 26031104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 20395280 - 20395208
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  20395280 aaatatatgtctttagcctggttgaaagccaaaaatgttgtttttaggtttggttcagataggtggtgctcaa 20395208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 12881141 - 12881213
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||    
T  12881141 aaatatatgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggttcagataggtggtgctcaa 12881213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 53779729 - 53779660
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgct 218  Q
    |||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||    
T  53779729 aaatatttgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggtacagataggtggtgct 53779660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 18935352 - 18935280
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||    
T  18935352 aaatataagtctttagcctggttgaaagccaaaaatgttgtttttaggtttggtacagatagttggtgttcaa 18935280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 10563765 - 10563837
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||| | ||||||||||    
T  10563765 aaatatttgtctttagcctggttgaaagcaaaaaaagttgtttttaggtttggtacagatagttggtgctcaa 10563837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 18107012 - 18107084
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||  |||||| ||||    
T  18107012 aaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggtgttcaa 18107084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 29213437 - 29213508
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||| |||||||||||| ||||||||||||||| | || ||||||||||||||||||| ||||||||||||    
T  29213437 aaatatttgtctttagcctagttgaaagccaaaaaagttg-ttttaggtttggtacagataggtggtgctcaa 29213508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 30274268 - 30274340
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||  |||||| ||||    
T  30274268 aaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggtgttcaa 30274340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 42777922 - 42777869
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggt 202  Q
    |||||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  42777922 aaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggt 42777869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 53487409 - 53487481
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||| |||||||| || | |||||||||||||||| |||||  |||||| ||||    
T  53487409 aaatatatgtctttagcctggttaaaagccaataaggttgtttttaggtttggttcagatatgtggtgttcaa 53487481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 34322775 - 34322834
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagat 208  Q
    |||||||||||||||| ||||||||||||||| || | |||||||||||||||| |||||    
T  34322775 aaatatatgtctttaggctggttgaaagccaataaggttgtttttaggtttggttcagat 34322834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 42823128 - 42823069
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagat 208  Q
    |||||||||||||||||||||||||||||||| ||   |||||||||||||||| |||||    
T  42823128 aaatatatgtctttagcctggttgaaagccaataagattgtttttaggtttggttcagat 42823069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 1844724 - 1844785
Alignment:
Q  160 tttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||| | |||||| | |||||||||||||||| ||||| ||||||||||||    
T  1844724 tttagcctggttgaatggcaaaaaggttgtttttaggtttggttcagataggtggtgctcaa 1844785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 449735 - 449663
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||| ||||||||||||||||||||||| || | | |||||||||||||| |||||  |||||| ||||    
T  449735 aaatatatatctttagcctggttgaaagccaataaggttatttttaggtttggttcagatatgtggtgttcaa 449663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 31863950 - 31863878
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| |  || |||| ||||||| ||||| | ||||| ||||    
T  31863950 aaatatatgtctttagcctggttgaaagccaaaaaggtggtctttaagtttggttcagatagttggtgttcaa 31863878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 52741295 - 52741347
Alignment:
Q  150 aatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggt 202  Q
    ||||||||||||||| ||||||||||||||| || | ||||||||||||||||    
T  52741295 aatatatgtctttaggctggttgaaagccaataaggttgtttttaggtttggt 52741347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 55854470 - 55854406
Alignment:
Q  157 gtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||| || | |||||||||||||||| |||||  |||||| ||||    
T  55854470 gtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggtgttcaa 55854406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 49969011 - 49968939
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  49969011 aaatatatgtctttagcctggttgaaagccaaaaatgttgtttttaggtttggttcagataggtggtgctcaa 49968939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 47587006 - 47586933
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaat 222  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||| |||||    
T  47587006 aaatatatgtctttagcctggttgaaagccaaaaagattgtttttaggtttggtacagataggtggtgttcaat 47586933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 9903721 - 9903793
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||  |||||||||||    
T  9903721 aaatatatgtctttagcctggttgaaagtcaaaaatgttgtttttaggtttggttcagataagtggtgctcaa 9903793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 41061600 - 41061672
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  41061600 aaatttatgtcttttgcatggttgaaagccaaaaatgttgtttttaggtttggtacagataggtggtgctcaa 41061672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 41181894 - 41181822
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| | ||||||||||    
T  41181894 aaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggttcagatagatggtgctcaa 41181822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 10711569 - 10711641
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||| ||||||| ||||    
T  10711569 aaatatatgtctttagcctggttgaaagccaaaaaggtggtttttaggtttggttcagataggtggtgttcaa 10711641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 47107136 - 47107207
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctca 220  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||  ||||||||||    
T  47107136 aaatatatgtctttagcctggctgaaagccaaaaaggttgtttttagatttggtacagatatgtggtgctca 47107207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 30111380 - 30111433
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggt 202  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  30111380 aaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggt 30111433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 21344214 - 21344270
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtaca 205  Q
    |||| |||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  21344214 aaatctatgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggtaca 21344270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 21349079 - 21349135
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtaca 205  Q
    |||| |||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  21349079 aaatctatgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggtaca 21349135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 17707680 - 17707621
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagat 208  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||    
T  17707680 aaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagat 17707621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 25591930 - 25592002
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||| |||||||||||||||||||||||||| |  || |||||||||||| ||||| ||||||| ||||    
T  25591930 aaatatatatctttagcctggttgaaagccaaaaaggtggtctttaggtttggttcagataggtggtgttcaa 25592002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 40292542 - 40292594
Alignment:
Q  150 aatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggt 202  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  40292542 aatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggt 40292594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 26720383 - 26720333
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggttt 199  Q
    |||| |||||||||||| ||||||||||||||||| | |||||||||||||    
T  26720383 aaatttatgtctttagcatggttgaaagccaaaaaggttgtttttaggttt 26720333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 10722718 - 10722649
Alignment:
Q  152 tatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||| |||||||||||||| ||||| |  ||||||| ||||||| ||||| ||||||| ||||    
T  10722718 tatatgtcttttgcctggttgaaagctaaaaaggtggtttttaagtttggttcagataggtggtgttcaa 10722649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 21335678 - 21335712
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaa 183  Q
    |||||||||||||||||||||||||||| ||||||    
T  21335678 aaatatatgtctttagcctggttgaaaggcaaaaa 21335712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 12173892 - 12173828
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtg 213  Q
    ||||||||||||||||||| | |||||||||| || | ||  ||||||||||| |||||| ||||    
T  12173892 aaatatatgtctttagcctagatgaaagccaagaaggttgcctttaggtttggcacagataggtg 12173828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 7459127 - 7459200
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaat 222  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  7459127 aaatatttgtctttagcctggttgaaagcaaaaaaagctgtttttaggtttggtacagataggtggtgctcaat 7459200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 4076959 - 4076887
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||  |||||| ||||    
T  4076959 aaatatatgtctttagcctggttgaaagctaaaaaggttgtttttaggtttggtacagataagtggtgttcaa 4076887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 28060262 - 28060190
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| || ||||||| ||||    
T  28060262 aaatatatgtctttagcctggttgaaagtcaaaaatgttgtttttaggtttagtacatataggtggtgttcaa 28060190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 34231383 - 34231311
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||  |||||| ||||    
T  34231383 aaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggtgttcaa 34231311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 10282276 - 10282343
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtg 216  Q
    ||||||||||||||||||||| ||||||||||||| ||||  ||||||||||| |||||| |||||||    
T  10282276 aaatatatgtctttagcctggatgaaagccaaaaaggctgcctttaggtttggcacagataggtggtg 10282343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 29114005 - 29114077
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||||||| || | ||||||||| |||||| |||||  |||||| ||||    
T  29114005 aaatatatgtctttagcctggttgaaagccaagaaggttgtttttagttttggttcagatatgtggtgttcaa 29114077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 46177901 - 46177867
Alignment:
Q  187 tgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||| ||||||||||||    
T  46177901 tgtttttaggtttggtacagataggtggtgctcaa 46177867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 24124297 - 24124369
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| ||||    
T  24124297 aaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggtacagataggtggtgttcaa 24124369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 25341790 - 25341862
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||    
T  25341790 aaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggtacagatatgtggtgctcaa 25341862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 19221807 - 19221739
Alignment:
Q  153 atatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  19221807 atatatctttagcctggtcgaaagccaaaaatgttgtttttaggtttggtacagataggtggtgctcaa 19221739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 26845555 - 26845483
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||| |||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||    
T  26845555 aaatttatgtctttagcatggttgaaagccaaaaaggttgtttttaggtttggtacagataggtggtgctcaa 26845483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 47536952 - 47536880
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||||| ||||||||||||    
T  47536952 aaatatatgtctttagcctggttgaaaggcaaaaaagttgtttttaggtttggttcagataggtggtgctcaa 47536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 32093373 - 32093442
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||| ||||||||||||    
T  32093373 aaatatatgtctttagcctggttgaaagccaaaaa---tgtttttaggtttggttcagataggtggtgctcaa 32093442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 11639650 - 11639578
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||| ||||||| ||||    
T  11639650 aaatatatgtctttagcctggttgaaagccaaaaaggtggtttttaggtttggttcagataggtggtgttcaa 11639578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 50543905 - 50543833
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||| ||||||| ||||    
T  50543905 aaatatatgtctttagcctggttgaaagccaaaaaggttgtgtgtaggtttggtacagataggtggtgttcaa 50543833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 8695347 - 8695419
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||| |||||||||||||||||| |  || |||||||||||| ||||| ||||||| ||||    
T  8695347 aaatatatgtctttagtctggttgaaagccaaaaaggtggtctttaggtttggttcagataggtggtgttcaa 8695419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 9047234 - 9047306
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||| |||||||||||||||||| |  || |||||||||||| ||||| ||||||| ||||    
T  9047234 aaatatatgtctttagtctggttgaaagccaaaaaggtggtctttaggtttggttcagataggtggtgttcaa 9047306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 46909123 - 46909190
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtg 216  Q
    ||||||||||||||||||||| |||||||||||||||    |||||||||||||| |||| |||||||    
T  46909123 aaatatatgtctttagcctggatgaaagccaaaaatgtaaattttaggtttggtagagataggtggtg 46909190  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 36635122 - 36635050
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||| |||| || | |||||||||||||| | | |||| |||||| ||||    
T  36635122 aaatatatgtctttagcctggttgaaaaccaataaagttgtttttaggtttgcttctgatgtgtggtgttcaa 36635050  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 33121773 - 33121832
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagat 208  Q
    |||||||||||||||||||||||||||| ||| ||   |||||||||||||||| |||||    
T  33121773 aaatatatgtctttagcctggttgaaagtcaataagattgtttttaggtttggttcagat 33121832  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 46665164 - 46665097
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtg 216  Q
    ||||||||||||||||||||| |||||||||| || ||||  ||||||||||| || ||| |||||||    
T  46665164 aaatatatgtctttagcctggatgaaagccaagaaggctgcctttaggtttggcaccgataggtggtg 46665097  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 43122122 - 43122174
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttgg 201  Q
    ||||||||||||||||||| | |||||||||| || ||||  |||||||||||    
T  43122122 aaatatatgtctttagcctagatgaaagccaagaaggctgcctttaggtttgg 43122174  T

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Target: scaffold0308 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 11762 - 11690
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||| ||||||||||||    
T  11762 aaatatatgtctttagcctggttgaaaacaaaaaatgttgtttttaggtttggttcagataggtggtgctcaa 11690  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 11061312 - 11061384
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||| ||||| ||||||||||||    
T  11061312 aaatatatgtccttagcctggttgaaagcaaaaaaagctgtttttaagtttggttcagataggtggtgctcaa 11061384  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 33722737 - 33722665
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||||  |||||||||||    
T  33722737 aaatatatgtttttagcctggttgaaagttaaaaatgttgtttttaggtttggtacagataagtggtgctcaa 33722665  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 17079647 - 17079719
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||| |||||  |||||| ||||    
T  17079647 aaatatatgtctttagcctggttgaaagccaaaaaggtggtttttaggtttggttcagataagtggtgttcaa 17079719  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 17874257 - 17874329
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||| ||  |||||||||||    
T  17874257 aaatatttgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggcacatataagtggtgctcaa 17874329  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 9199708 - 9199761
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggt 202  Q
    |||||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  9199708 aaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggt 9199761  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 26526215 - 26526146
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgct 218  Q
    |||| |||||||||||| ||||||||||  ||||| | |||||||||||||||||||||| | |||||||    
T  26526215 aaatttatgtctttagcatggttgaaagttaaaaaggttgtttttaggtttggtacagatagatggtgct 26526146  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 30273684 - 30273612
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||| |||||||||||| |||||||||| |||||| | |||||||||||||||||||||| ||||||||||||    
T  30273684 aaatgtatgtctttagcatggttgaaagacaaaaaggttgtttttaggtttggtacagataggtggtgctcaa 30273612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 3000204 - 3000276
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||  |||||| ||||    
T  3000204 aaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggtgttcaa 3000276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 7075796 - 7075724
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||||||||||||||||||||||||||||||| || | |||||| || |||||| |||||  |||||| ||||    
T  7075796 aaatatatgtctttagcctggttgaaagccaataaagttgttttcagatttggttcagatatgtggtgttcaa 7075724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 1379766 - 1379715
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttg 200  Q
    ||||||||||||||||| |||||||||||||| || | ||||||||||||||    
T  1379766 aaatatatgtctttagcttggttgaaagccaataaggttgtttttaggtttg 1379715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 7212 - 7140
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    |||| |||||||||||| ||||||||||||||||| | ||||||||||||| ||| |||| |||||| |||||    
T  7212 aaatttatgtctttagcatggttgaaagccaaaaaggttgtttttaggttttgtatagataggtggtactcaa 7140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 181813 - 181741
Alignment:
Q  149 aaatatatgtctttagcctggttgaaagccaaaaatgctgtttttaggtttggtacagatgggtggtgctcaa 221  Q
    ||||||||||||||||||||||||||||| ||||| |  || |||||||||||| || || ||||||| ||||    
T  181813 aaatatatgtctttagcctggttgaaagcaaaaaaggtggtctttaggtttggttcaaataggtggtgttcaa 181741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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