View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0865_low_64 (Length: 217)

Name: NF0865_low_64
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0865_low_64
NF0865_low_64
[»] scaffold0238 (1 HSPs)
scaffold0238 (13-123)||(13086-13196)
[»] chr2 (1 HSPs)
chr2 (13-123)||(10453250-10453360)
[»] chr1 (2 HSPs)
chr1 (13-123)||(12603744-12603854)
chr1 (13-123)||(23261779-23261892)
[»] chr4 (1 HSPs)
chr4 (13-123)||(56478055-56478168)


Alignment Details
Target: scaffold0238 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 13196 - 13086
Alignment:
Q  13 aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13196 aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagtt 13097  T
Q  113 gaagaagatat 123  Q
    |||||||||||    
T  13096 gaagaagatat 13086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 10453360 - 10453250
Alignment:
Q  13 aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10453360 aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgacagaagcaaatgagaggcgtggagct 10453261  T
Q  113 gaagaagatat 123  Q
    |||||||||||    
T  10453260 gaagaagatat 10453250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 12603744 - 12603854
Alignment:
Q  13 aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagct 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12603744 aatataatagaggagataagtgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagtt 12603843  T
Q  113 gaagaagatat 123  Q
    |||||||||||    
T  12603844 gaagaagatat 12603854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 23261892 - 23261779
Alignment:
Q  13 aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatga----tagaagcaaatgagaggcgtgg 108  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||| | |||||||||| |||     |||||||||||||| ||||||    
T  23261892 aataaaatagaggagataaatgaccgttttaagatcatgcttctaaaatagaggagatc-aatcaagaagttgacctgaagaagcaaatgagaagcgtgg 23261794  T
Q  109 agctgaagaagatat 123  Q
    |||||||||||||||    
T  23261793 agctgaagaagatat 23261779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 56478055 - 56478168
Alignment:
Q  13 aatataatagaggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatga----tagaagcaaatgagaggcgtgg 108  Q
    |||| |||||||||||||||||||| | |||||||||||| ||||| |||||||||| | |||||||||| |||     |||||||||||||| ||||||    
T  56478055 aataaaatagaggagataaatgaccgtattaagatcatgcttctaaaatagaggagatc-aatcaagaagttgacctgaagaagcaaatgagaagcgtgg 56478153  T
Q  109 agctgaagaagatat 123  Q
    |||||||||||||||    
T  56478154 agctgaagaagatat 56478168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3107 times since January 2019
Visitors: 6169