View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_7 (Length: 453)
Name: NF0865_low_7
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 181 - 444
Target Start/End: Original strand, 43473581 - 43473844
Alignment:
| Q |
181 |
aatatttcttttaccaacccgaggagtggtgtgtgggtgtatcacttaaagggtgtcgtattgatgtaacttctagtctaacttaataatgaccaacaaa |
280 |
Q |
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| T |
43473581 |
aatatttcttttaccaacc-gagaagtggtgtgtgggtgtatcacttaaagggtgtcgtgtcgatgtaacttctagtctaacttaat---gaccaacaaa |
43473676 |
T |
|
| Q |
281 |
aataaagtctcatcctagttttttgtaaacaaaaattcccatttagaagagcgagaaaataactaat----taagattattttgtaacagagaattcctt |
376 |
Q |
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|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
43473677 |
aataaagtttcatcctagttttttgttaacaaaaattcctatttagaagagcgagaaaataactaattaattaagattattttgtaacagataattcctt |
43473776 |
T |
|
| Q |
377 |
tttgaaaatcaaaaggctaatcgtataagtgcactcccgaaccctaacaatatcattctcatctgtgc |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43473777 |
tttgaaaatcaaaaggctaatcgtataagtgcactcccgaaccctaacaatattattctcatctgtgc |
43473844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 43965895 - 43965741
Alignment:
| Q |
7 |
aatacatctttcttcttcaatcaaagttcatacaaatgcaaactctgggagaaaagcattgattcatttctgttttcggtttcaatcaggaaccaagaaa |
106 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43965895 |
aatacatctttcctcttcaaccaaagttcatacaaatgcaaactctgggagaaaagcattgattcatttctgttttcggtttcaatcaggaaccaagaaa |
43965796 |
T |
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| Q |
107 |
atgccgacgtacaagatcagaggaatcgacgttgattttccctatgaagcctatg |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43965795 |
atgccgacgtacaagatcagaggaatcgacgttgattttccctatgaagcctatg |
43965741 |
T |
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