View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0865_low_70 (Length: 210)
Name: NF0865_low_70
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 44105913 - 44105723
Alignment:
| Q |
1 |
cactttgcaagtgattccattgaaaggtgcaatgaccaatgaagtgtttcagataaattggccaacaaaaaatgatggtgatttgaggaaggttctggtt |
100 |
Q |
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| T |
44105913 |
cactttgcaagtgattccattgaaaggtgcaatgaccaatgaagtgtttcagataaattggccaacaaaaaatgatggtgatttgaggaaggttctggtt |
44105814 |
T |
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| Q |
101 |
cgtttatatggtgaaggtgttgaaattttcttcaatagggatgaagaaattcgaaccttcgagtgtatctcaaagcatggtcaaggtccac |
191 |
Q |
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| T |
44105813 |
cgtttatatggtgaaggtgttgaaattttcttcaatagggatgaagaaattcgaaccttcgagtgtatctcaaagcatggtcaaggtccac |
44105723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 14334863 - 14334721
Alignment:
| Q |
26 |
ggtgcaatgaccaatgaagtgtttcagataaattggccaacaaaaaatgatggtgatttgaggaaggttctggttcgtttatatggtgaaggtgttgaaa |
125 |
Q |
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| T |
14334863 |
ggtgcaatgacaaatcaggtttttgaggtgaattggccgacgaaaagcgatggtcatcttagaagggttttggttcgattatatggtgaaggtgttgagg |
14334764 |
T |
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| Q |
126 |
ttttcttcaatagggatgaagaaattcgaaccttcgagtgtat |
168 |
Q |
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| T |
14334763 |
ttttcttcaatagggatgatgaaatccaaacatttgagtgtat |
14334721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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