View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0865_low_76 (Length: 202)

Name: NF0865_low_76
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0865_low_76
NF0865_low_76
[»] chr5 (4 HSPs)
chr5 (7-122)||(17219684-17219799)
chr5 (4-100)||(8095278-8095374)
chr5 (50-85)||(2313006-2313041)
chr5 (70-122)||(17219056-17219108)
[»] chr2 (2 HSPs)
chr2 (4-113)||(24399360-24399469)
chr2 (50-85)||(35112889-35112924)
[»] chr6 (3 HSPs)
chr6 (63-122)||(29201386-29201445)
chr6 (73-122)||(29200721-29200770)
chr6 (1-29)||(29201357-29201385)
[»] chr4 (6 HSPs)
chr4 (45-117)||(32648358-32648430)
chr4 (70-117)||(32647706-32647753)
chr4 (50-85)||(26341504-26341539)
chr4 (51-112)||(30057147-30057207)
chr4 (51-112)||(30057816-30057876)
chr4 (51-115)||(1995474-1995538)
[»] chr1 (2 HSPs)
chr1 (51-115)||(45517949-45518013)
chr1 (54-122)||(26779706-26779774)
[»] chr7 (2 HSPs)
chr7 (50-85)||(37034861-37034896)
chr7 (49-85)||(40459698-40459734)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 17219684 - 17219799
Alignment:
Q  7 tggatagagtgataatggacacatgtggtgtttaattggagtcatttaatctcaaccatctatttttaatctgatggctcctattcattcttaccgttct 106  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||    
T  17219684 tggatagagtggttgtggacacatgtggtgtttaattggactcatttaatctcaaccatatatttttaatctgatggctcctattcattcctaccattct 17219783  T
Q  107 cacataaaatattcat 122  Q
    ||||||||||| ||||    
T  17219784 cacataaaatactcat 17219799  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 8095374 - 8095278
Alignment:
Q  4 tgatggatagagtgataatggacacatgtggtgtttaattggagtcatttaatctcaaccatctatttttaatctgatggctcctattcattcttac 100  Q
    |||||||||||||| |  ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| |   ||||||||||||    
T  8095374 tgatggatagagtggttgtggacacatgtggtgtttaaaaggactcatttaatctcaaccatctatttttaatctgatggttgtaattcattcttac 8095278  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 2313041 - 2313006
Alignment:
Q  50 atttaatctcaaccatctatttttaatctgatggct 85  Q
    ||||||||||||||||||||||||||||| ||||||    
T  2313041 atttaatctcaaccatctatttttaatctaatggct 2313006  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 17219108 - 17219056
Alignment:
Q  70 ttttaatctgatggctcctattcattcttaccgttctcacataaaatattcat 122  Q
    ||||||||| |||||||  |||||||| |||| ||||||||||||||| ||||    
T  17219108 ttttaatctaatggctcaaattcattcctaccattctcacataaaatactcat 17219056  T

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Target: chr2 (Bit Score: 62; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 24399360 - 24399469
Alignment:
Q  4 tgatggatagagtgataatggacacatgtggtgtttaattggagtcatttaatctcaaccatctatttttaatctgatggctcctattcattcttaccgt 103  Q
    |||||||||||||| |  |||| ||||||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||   ||||||||||||| |    
T  24399360 tgatggatagagtggttgtggatacatgtggtgtttaaatggactcatttaatctcaaccatttatttttaatccgatggctgtaattcattcttaccat 24399459  T
Q  104 tctcacataa 113  Q
    ||||||||||    
T  24399460 tctcacataa 24399469  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 35112924 - 35112889
Alignment:
Q  50 atttaatctcaaccatctatttttaatctgatggct 85  Q
    ||||||||||||||||||||||||||||| ||||||    
T  35112924 atttaatctcaaccatctatttttaatctaatggct 35112889  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 29201386 - 29201445
Alignment:
Q  63 catctatttttaatctgatggctcctattcattcttaccgttctcacataaaatattcat 122  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  29201386 catctatttttaatttgatggctcctattcattcttagcattctcacataaaatattcat 29201445  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 29200770 - 29200721
Alignment:
Q  73 taatctgatggctcctattcattcttaccgttctcacataaaatattcat 122  Q
    |||| ||| ||||||||||||||| |||| ||||||||||||||| ||||    
T  29200770 taatttgacggctcctattcattcctaccattctcacataaaatactcat 29200721  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29201357 - 29201385
Alignment:
Q  1 aactgatggatagagtgataatggacaca 29  Q
    |||||||||||||||||||||||||||||    
T  29201357 aactgatggatagagtgataatggacaca 29201385  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 32648358 - 32648430
Alignment:
Q  45 gagtcatttaatctcaaccatctatttttaatctgatggctcctattcattcttaccgttctcacataaaata 117  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||||||| ||   |||||||||||||||    
T  32648358 gagtcttttaatctcttccatctatttttaatctgatggctcctattcattcctattattctcacataaaata 32648430  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 32647753 - 32647706
Alignment:
Q  70 ttttaatctgatggctcctattcattcttaccgttctcacataaaata 117  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||    
T  32647753 ttttaatctgatggctcctattcattcctatcattctcacataaaata 32647706  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 26341539 - 26341504
Alignment:
Q  50 atttaatctcaaccatctatttttaatctgatggct 85  Q
    ||||||||||||||||||||||||||||| ||||||    
T  26341539 atttaatctcaaccatctatttttaatctaatggct 26341504  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 30057207 - 30057147
Alignment:
Q  51 tttaatctcaaccatctatttttaatctgatggctcctattcattcttaccgttctcacata 112  Q
    |||||||||| |||| |||||| ||||| ||||||| |||||||||||| | ||||||||||    
T  30057207 tttaatctcagccatgtatttt-aatctaatggctcatattcattcttatcattctcacata 30057147  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 30057816 - 30057876
Alignment:
Q  51 tttaatctcaaccatctatttttaatctgatggctcctattcattcttaccgttctcacata 112  Q
    |||||||||| |||| |||||| ||||| |||||||||||| ||||||| | ||||||||||    
T  30057816 tttaatctcagccatgtatttt-aatctaatggctcctatttattcttatcattctcacata 30057876  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 1995474 - 1995538
Alignment:
Q  51 tttaatctcaaccatctatttttaatctgatggctcctattcattcttaccgttctcacataaaa 115  Q
    |||||||||||||||   |||||||| ||||||||| |||||||||| | | |||||| ||||||    
T  1995474 tttaatctcaaccattcctttttaatttgatggctcttattcattctcatcattctcatataaaa 1995538  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 45517949 - 45518013
Alignment:
Q  51 tttaatctcaaccatctatttttaatctgatggctcctattcattcttaccgttctcacataaaa 115  Q
    ||||||||||||||| | |||||||| ||||||||| |||||||||| | |||||||| ||||||    
T  45517949 tttaatctcaaccatttctttttaatttgatggctcttattcattctcatcgttctcatataaaa 45518013  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 26779706 - 26779774
Alignment:
Q  54 aatctcaaccatctatttttaatctgatggctcctattcattcttaccgttctcacataaaatattcat 122  Q
    ||||||| ||||| |||||| |||| |||| || || ||||||| ||| ||||||||||||||| ||||    
T  26779706 aatctcagccatccatttttgatctaatggttcataatcattctcaccattctcacataaaataatcat 26779774  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 37034896 - 37034861
Alignment:
Q  50 atttaatctcaaccatctatttttaatctgatggct 85  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37034896 atttaatctcaaccatctatttttaatctaatggct 37034861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 40459734 - 40459698
Alignment:
Q  49 catttaatctcaaccatctatttttaatctgatggct 85  Q
    ||||||||||||||||| | |||||||||||||||||    
T  40459734 catttaatctcaaccatttctttttaatctgatggct 40459698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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