View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0865_low_8 (Length: 416)
Name: NF0865_low_8
Description: NF0865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0865_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 38052476 - 38052089
Alignment:
| Q |
1 |
ttttttataaggtggtgggccatgttgttctgacaaaccaccttgttgaccccaccactgttctgttccattaggccaccatggaggagccaaacctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38052476 |
ttttttataaggtggtgggccatgttgttctgacaaaccaccttgttgaccccaccactgttctgttccattaggccaccatggaggagccaaacctatt |
38052377 |
T |
|
| Q |
101 |
tcaagagggaatcttctttgtggtggcacacagtgttgcattagagctgaaagaagagaacctaaagtagtatcttgcaagtcataaagtaaatgcatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38052376 |
tcaagagggaatcttctttgtggtggtacacagtgttgcattagagctgaaagaagagaacctaaagtagtatcttgcaagtcataaagtaaatgcatat |
38052277 |
T |
|
| Q |
201 |
atgatgaaatgggatctaataattctaactcttgttgattttctaagagtgatgatggtaagtatttggaaactgcagctggtgcattttgactgaattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38052276 |
atgatgaaatgggatctaataattctaactcttgttgattttctaagagtgatgatggtaagtatttggaaactgcagctggtgcattttgactgaattt |
38052177 |
T |
|
| Q |
301 |
aacttgttctttccaccattcacgcaagctttctgaagaacctgttactggttttcctttctctggaacaataccatagacaaaacct |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38052176 |
aacttgttctttccaccattcacgcaagctttctgaagaacctgttactggttttcctttctctggaacaataccatagacaaaacct |
38052089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 184 times since January 2019
Visitors: 6125